Protein Info for Pf1N1B4_521 in Pseudomonas fluorescens FW300-N1B4

Annotation: ABC transporter, transmembrane region:ABC transporter:Peptidase C39, bacteriocin processing

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 719 transmembrane" amino acids 167 to 190 (24 residues), see Phobius details amino acids 204 to 225 (22 residues), see Phobius details amino acids 277 to 299 (23 residues), see Phobius details amino acids 305 to 325 (21 residues), see Phobius details amino acids 395 to 416 (22 residues), see Phobius details amino acids 420 to 445 (26 residues), see Phobius details TIGR03375: type I secretion system ATPase" amino acids 19 to 712 (694 residues), 939.4 bits, see alignment E=6.1e-287 PF00664: ABC_membrane" amino acids 171 to 429 (259 residues), 69.4 bits, see alignment E=4.2e-23 PF00005: ABC_tran" amino acids 500 to 649 (150 residues), 112.3 bits, see alignment E=2.9e-36

Best Hits

KEGG orthology group: K06148, ATP-binding cassette, subfamily C, bacterial (inferred from 94% identity to pfo:Pfl01_1461)

Predicted SEED Role

"ABC transporter, transmembrane region:ABC transporter:Peptidase C39, bacteriocin processing"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161Z442 at UniProt or InterPro

Protein Sequence (719 amino acids)

>Pf1N1B4_521 ABC transporter, transmembrane region:ABC transporter:Peptidase C39, bacteriocin processing (Pseudomonas fluorescens FW300-N1B4)
MTSMETGNTGVDPRLSFDDPLLDGLLILCKLHGATVSRASLSAGLPMAHQRLSLDLLPRA
AARASLQARVLRRELGEISALNLPVMLILNHGRCAILRRFGDDGQALILPSEADGGEQWV
STDELAANYSGQALFARPRHELEDLRAPLVPRVEAWFRDTLKLSKWLYSDAILASFLINL
LGLMVPLFVMQTYDRVVPNQATSTLWVLSIGLLIGTGFELVLRVVRAHLLDTAGKKTDVI
LSATLFERITGMAMKARPATIGGFAQSIHDFQGLREFLTAVTLTSLIDLPFAVLMLVVIG
LLGGWLVVIPLLAFPITIIFAMVIQARLRDTVQKSLSLGAERQALLIETLGGLETLKACS
AESERQHKWESTHGALTRLDSHARNLSALATNGTLFIQQFCGMATIVAGVYSIIAGNLSV
GALVATYMLGSRVLAPLGQIAGLITRYQQAQLTMKSTDALMSLPQERDAKQRPLERTQLQ
GALDVSGVTFHYNGQNAPALTNVSFSMKPGERIGIIGRSGSGKSTLARLVMGFYAPEEGQ
LLLDGLDLRQLDVADLRQQIGYVAHDLPLLAGSLRDNLTLGARYISDARMLEVAELTGVT
ELARQHPHGFDRPVGERGQLLSGGQRQAVLLARALLLDPPIMLLDEPTSAMDNSSEDVLR
QKLHGWIQGKTLLLVTHRTSMLSLVDRLVVLDNGRIVADGPKEAVIDALRKGRVGSATV