Protein Info for Pf1N1B4_519 in Pseudomonas fluorescens FW300-N1B4

Annotation: T1SS secreted agglutinin RTX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2372 PF17963: Big_9" amino acids 305 to 414 (110 residues), 29.9 bits, see alignment 1.5e-10 amino acids 560 to 664 (105 residues), 26.9 bits, see alignment (E = 1.3e-09) amino acids 809 to 918 (110 residues), 26.8 bits, see alignment 1.4e-09 amino acids 1050 to 1162 (113 residues), 30 bits, see alignment 1.4e-10 amino acids 1295 to 1406 (112 residues), 26.7 bits, see alignment 1.5e-09 PF17803: Cadherin_4" amino acids 306 to 383 (78 residues), 26.6 bits, see alignment (E = 1.4e-09) amino acids 561 to 633 (73 residues), 28.3 bits, see alignment (E = 4.2e-10) amino acids 809 to 893 (85 residues), 27.5 bits, see alignment (E = 7.5e-10) amino acids 1051 to 1137 (87 residues), 28.6 bits, see alignment (E = 3.3e-10) TIGR01965: VCBS repeat" amino acids 367 to 438 (72 residues), 35.6 bits, see alignment (E = 1.2e-12) amino acids 617 to 683 (67 residues), 31.6 bits, see alignment (E = 2.1e-11) amino acids 874 to 934 (61 residues), 18.1 bits, see alignment (E = 3.6e-07) amino acids 997 to 1074 (78 residues), 27.2 bits, see alignment (E = 5.2e-10) amino acids 1118 to 1188 (71 residues), 16.5 bits, see alignment (E = 1.1e-06) amino acids 1236 to 1318 (83 residues), 25.5 bits, see alignment (E = 1.8e-09) amino acids 1485 to 1551 (67 residues), 21 bits, see alignment (E = 4.5e-08) PF13519: VWA_2" amino acids 1570 to 1681 (112 residues), 46.3 bits, see alignment 1.2e-15 PF00353: HemolysinCabind" amino acids 2105 to 2138 (34 residues), 35.5 bits, see alignment (E = 1.6e-12) amino acids 2133 to 2166 (34 residues), 32.6 bits, see alignment (E = 1.3e-11) amino acids 2197 to 2229 (33 residues), 15 bits, see alignment (E = 4.1e-06) amino acids 2222 to 2255 (34 residues), 26.6 bits, see alignment (E = 9.8e-10) amino acids 2231 to 2256 (26 residues), 18.2 bits, see alignment (E = 4.1e-07) TIGR03661: type I secretion C-terminal target domain (VC_A0849 subclass)" amino acids 2266 to 2368 (103 residues), 66.7 bits, see alignment (E = 5.1e-22)

Best Hits

KEGG orthology group: None (inferred from 63% identity to pen:PSEEN3925)

Predicted SEED Role

"T1SS secreted agglutinin RTX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MP58 at UniProt or InterPro

Protein Sequence (2372 amino acids)

>Pf1N1B4_519 T1SS secreted agglutinin RTX (Pseudomonas fluorescens FW300-N1B4)
MATLIGIVSKVIGQVYAVAGDGTRRTLVEGDRLFAGEQLVTGAEGAVAVQLQNGQELTLG
RDSSLQMTAQLLAHQVPHVETADAVTPSQAQLTDVEQLQKAIAAGADPTQTGEATAAGPG
SGAPGGLGGGHSFVLLEEVAGRVDPTVGFPTAGFNGIPEFLLERRDTDPDNGDSGDAPNN
PVTLIGLSAAGGELTLNEAHLADGSASNPGALTQNGTFTIIAADGLTSLNIGGINVISGG
VPAGFPQSITTQLGNTLTITGYNPATGVVSYSYTLVGNETHSAGDGANNLSEQFTVVASD
SNGDTATGSLDVNITDDVPKAIDDTNANTASETLLTLTGSVLPNDLQGADRIATGPDSGP
IIGGTFNGTYGTLVLNPNGTYTYTLNTSDADFKALHGGGSATETFIYTLTDADGDTSTAN
LVLEIHNNDDPVIIGGLNAEGGELTVYEKNLADGSDPDAPALTRSGTFTITAPDGVQTLS
VGAINVVLGGLAADFPQTFITPLGNTLTITGFDRATGVITYSYTLNANDAHPDASGADRL
AGQFAVTMVDDNGTTAHGILDVNIVDDVPQAVDDSNANTASETLLTLIGSVLPNDIQGAD
RIPTGPDSGPVIGGTFNGTYGTLLLNANGTYTYTLNTSDADFKALNGGGSATENFVYTLT
DSDGDTSTATLVLEIHNNDDPVTLDGLNVDGGELTVYEKNLSDGTNPNTPALTQSGTFTV
TALDGLQTLTVGGIAVVTGGVVAGFPQSIVTALGNTLTVTGFNSTTGVVSYSYTLTDNET
HPNADGTNSITENLNVVATDVDGSTALGQINVNIVDDLPTANPDLATIAEGATASGNVLN
NDVGGADGPALSGAVVGVRAGSDTSTSAIGGLNTQINGTYGYLTLDANGNAVYHSNPNSV
SAPGATDVFTYTVRDADGDESTTTITINVADCTLVAASDSDVTVNEKALDLAQDGQDLAA
GTVTGSEPGNAGETGSGTLVGSVTGATGTITYTLVGSATGTYGQILLNPDGSYTYTLTSA
PATTPNVNDGPNTLSESFTYQATDPLGNSVTSTIVINIVDDVPTAHADAVAVAEGGTVSG
NVLGNDVLGADGPAAGGAVVGVRAGSDTSTSAIGGLNSQINGTYGYLTLDANGNAVYHSN
PNSVSAPGATDVFTYTVRDGDGDESTTTITIDVSNCSLVVAPDTDVTVQEKALDLTKDGQ
DLAAGTVTGSDPGNTGETASGTLAGSITGATGAITYSLVGSATGTYGQLLLNPDGSYTYT
LTSAPKTSPNANDGANTLNENFTYTATDSVGNSITSTIVITIVDDVPTAYCDSVAVVEGG
AVSGNVLHNDVLGADGPASGGAVVGVRAGSDTSTSAIGGLNTQINGTYGYLTLDASGNAV
YHSNPNSVGEAGATDVFTYTVRDADGDESTTILTIDVHNNCLVTTTDTDVTVYEKALDLT
QNGQDLAAGTVIGSEPGNTGETGSGTLVGSVTGATGAITYTLVGSATGTYGQILLNPDGS
YTYTLTSAPKTSPNANDGANTLNESFTYTATDSVGNSTTGTLVVSIVDDVPSNAVASDRS
VPAVQIDSNLLLVIDVSGSMDDPSGVSGLSRLELAKQAISTLLDKYDNLGDVKVQVVTFS
SSATDQTSVWVDVATAKSIIATLTAGGGTNYDVAVATMQTAFDTSGKLTGAQNVGYFFSD
GKPNEGDIGTADEAALKVFLDANGIKNYAIGLGSGVSNDSLDPVAYDGSTHTDTNAVAVT
DLNQLNSVLSGTVQGAPVTGLLLGEGEGGTFGADGGFIKTITVDGTTYTYDPKGNSNQGS
LIFSGGVNHGTFNTADNTLSIATDNSGTLLVNLDTGEYTYLSQKTTAAVITENIGFTASD
NDGDLASSTLVINVIPNTPPVAVDDHVITNVLSGSLVVPGELLLANDTDADGDALTASPT
TFNTGWLTKGADFTGTNSNFSFTGNNQAVTIARSAFVANTAAMTAVLVVSGALGAVSSNN
TNDEDQITVNLKQGETLNLDHNLAAGHVTMEYSVNGGAFIAIADGQTITASADGTYQIHI
TNIDDGGPGNSGKGSENYQLTMTVNYAGAHETTPDFHGTYTVNDNHGGSDSANVTISYQD
GHTLTGTSGDDVLVAGAGNNVINAGDGNDVLTAGSGNNEMHGGAGNDLLFSGAGNDLLDG
GTGNDTASYAHATAGVTADLSLLSAQDTLGAGTDTLTGIENLTGSNFNDSLMGDNNSNII
NGGLGDDVLNGGGGDDFLIGGLGNNTLTGGSGADTFQWLKGNSGHDVITDFTPGTDKLDL
SQLLQGENGTAASLDDYLHFTVSGSGASVITSIDVSAMAGATPNQTIDLAGVNLASHYGV
TPGAGGVIAGGADTATIINGMLNDHSLKVDTV