Protein Info for Pf1N1B4_5159 in Pseudomonas fluorescens FW300-N1B4

Annotation: Cellulose synthase operon protein C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1286 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13432: TPR_16" amino acids 42 to 93 (52 residues), 20.3 bits, see alignment (E = 4.2e-07) amino acids 279 to 340 (62 residues), 20.6 bits, see alignment 3.4e-07 amino acids 356 to 400 (45 residues), 16.4 bits, see alignment (E = 6.9e-06) amino acids 391 to 446 (56 residues), 26.5 bits, see alignment (E = 5e-09) amino acids 468 to 530 (63 residues), 15.7 bits, see alignment 1.1e-05 amino acids 692 to 755 (64 residues), 16.4 bits, see alignment 6.9e-06 amino acids 727 to 788 (62 residues), 17.9 bits, see alignment 2.5e-06 PF14559: TPR_19" amino acids 284 to 344 (61 residues), 27 bits, see alignment 2.9e-09 amino acids 364 to 423 (60 residues), 33.3 bits, see alignment 3.3e-11 amino acids 398 to 452 (55 residues), 34.5 bits, see alignment (E = 1.3e-11) amino acids 474 to 524 (51 residues), 28.6 bits, see alignment (E = 9.7e-10) amino acids 507 to 570 (64 residues), 33 bits, see alignment 4e-11 amino acids 697 to 757 (61 residues), 34.5 bits, see alignment 1.4e-11 PF13428: TPR_14" amino acids 723 to 763 (41 residues), 25.7 bits, see alignment (E = 8.2e-09) PF05420: BCSC_C" amino acids 940 to 1267 (328 residues), 369 bits, see alignment E=1.6e-113

Best Hits

Predicted SEED Role

"Cellulose synthase operon protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161ZE91 at UniProt or InterPro

Protein Sequence (1286 amino acids)

>Pf1N1B4_5159 Cellulose synthase operon protein C (Pseudomonas fluorescens FW300-N1B4)
MHAHHRTLAIAVMSAWTAAAHAQSPTPQALLVEQGQYWQLHNNPQRAAEVWLKVLLLDPA
QVDALYGLGLIGVQQGKPQQAQQYLARLQAIQPPPRQALQLAQDISVAQPQNQQRLEEAR
RLVDAGERDKATAVFRSLFDGRPPQGTIGREYYNNLAFNQADWAEARGGFQRLQREMPND
SIVALFYAKHLVRREDSRAEGIRALAALTQRADIAGDADESWRLALTWIGPPNPAQVPLF
EAYLKTHPDDVEIRAQMNKGKQQVATTASKEWQPPAEVARGLKALKEGDQATAEQAFQAR
LKTRPDDADALGGLGVIRQQQHRLAEAEKLLSQATRQNDGSHWQVALNEVRYWSALQQAR
DAQAKGQAAQAQVLVNQALRLNPNGVDARLALADIQASAGQFDDALRNYRQILNQRRDDP
QAQEGLVNVLLKSGKNDEALQLINSLPATGQAKIGQSVRLQALRATQLAALAEQRNDLPA
ARNALQDALRVEPDNIWTRFALARLNLAMGEPQKARDLINAMLQARPDNADALYVSALLS
VQMGEWKAAQTTLGRLRPDQRTPDMDALAADVSLNLQLHQAIELGKRGQRQEALTLLDRI
QPTANNSPDRTASLASAYVDIGEPTRALALMRGQLQNTTAPSADFILQYAAVLLKTGEDA
QVNEILRDLQNRPLNAPARKRFDDLLYRYRIRQADQLRERGNLASAYDTLAPALAQRPGD
SAAVAALARMYSANGDTAKALELYKPLLQRQPNDPQLLLGAADAAVLAQDTAFAEQALQQ
LLKTESGNPQTLTEAARRYQNMGQTGTATDLLRKAVAIEQSEKRRSQGGQLAGSSVAPNP
FAGISGPRSEVSRDTLLAAIPPPVQEMPGSVRSHTPFGIDAPPRPQQASNRFESQLPRAA
LVSEDISPAQLALNKILQERSAYVTQGVSIRSNNSESGLSKLTDVETPLEINIPLDESRV
ALRVTPVSLNAGSVSGDALPRFGSGAQSDGVGSQKAEGVGLSVAIQRPADGFKADLGTTP
LGFKYTTATGGISIDRPVSDSSNVRYGVSVSRRPVTDSVTSFAGTTDKRSGQSWGGVTAN
GGRGQLSFDDNEVGVYGYASWHQLLGNHVESNNRSELGSGVYWYLQNATDSKLTVGLSMT
GISYANNQDYFTYGHGGYFSPQTFFALGIPVTWAQRTGRLTYQVKGSVGVQHFEQDSADY
FPNDKALQAASGLRYEGQNKTGIGYSVAAAAEYKVASNFLLGANLGLDNAHDYQQVSGAL
SLRYQFEDISGPMSLPVSPYTSPYSN