Protein Info for Pf1N1B4_5121 in Pseudomonas fluorescens FW300-N1B4

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1818 PF19116: DUF5801" amino acids 440 to 580 (141 residues), 144.1 bits, see alignment 5e-46 amino acids 593 to 734 (142 residues), 143.5 bits, see alignment 7.6e-46 amino acids 747 to 888 (142 residues), 144.1 bits, see alignment 5e-46 amino acids 901 to 1042 (142 residues), 143.2 bits, see alignment 9.1e-46 amino acids 1055 to 1196 (142 residues), 143.7 bits, see alignment 6.3e-46 amino acids 1209 to 1350 (142 residues), 142.3 bits, see alignment 1.8e-45

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1818 amino acids)

>Pf1N1B4_5121 hypothetical protein (Pseudomonas fluorescens FW300-N1B4)
VLDETAGLQNAAATPTPAGDADDNDILVASLPSTFATRLTALGAGTATGAALSGYTGAAG
DTGSNAFTITGGGSISDISFVDSAGAPLNGVDSGLDTLDGTSILLYTDTNNNILLGRAGG
ADGAIVFAAYIEETGSPVTGGKIWTVEYQPLKHPDATNPDDSLNLLDKVFIGATQDQGFS
LAGAPSGQNLFLMFTKANPTTETVDGVVRITDTTIIATGKNPADQSSGANINTGDTINTS
QGGGPTTIGTNNQMITEQEGIRFSFVTGARQNVTVPNLSQTEADVESNIDFTGVFNSTSA
SFDVVQLQGGKSAVVKISAFNTAAEPGVNFVNGYANDTPVAITNVLVTNISTGQVIENSD
GSVNDPSIAITFTGGVATVTGVLAGYQIEYTTTADHNRVLIENGAAVDARGNDHADFDIG
GFTLRDTSTTIAEIGSKMIFEDDGPSVSATGTEPILTVDETVLTTDATQSFTANFSSAFG
ADGAGTLTYALGVTAGASGLTDTATGEAVNLSLNGGVVEGRTATTNLLVFTVSVAANGDV
TLDQLRAVVHPDATDPDDATSLSSDDLVTLTATITDKDGDSAQATLNIGQNLVFEDDGPS
ITTTGDEPTLTVDETVLTTDATQSFTANFSSAFGADGAGTLTYALGATAGASGLTDTATG
EAVNLSLNGGVVEGRTATTNLLVFTVSVAANGDVTLDQLRAVVHPDATDPDDATSLSSDD
LVTLTATITDKDGDSAQATLNIGQNLVFEDDGPSISTTGDEPTLTVDETVLTTDATQSFT
ANFSSAFGADGAGTLTYALGMTAGPSGLTDTATGEAVNLSLNGGVVEGRTATTNLLVFTV
SVAANGDVTLDQLRAVVHPDATDPDDATSLSSDDLVTLTATITDKDGDSAQATLDIGQNL
VFEDDGPSIHTTGDEPTLTVDETVLATDATQSFTANFSSAFGADGAGTLTYALGATAGPS
GLTDTATGEAVNLSLNGGVVEGRTATTNLLVFTVSVAANGDVTLDQLRAVVHPDATDPDD
ATSLSSDDLVTLTATITDKDGDSAQATLNIGQNLVFEDDGPSITTTGDEPTLTVDETVLA
TDATQSFTANFSSAFGADGAGTLTYALGATAGPSGLTDTATGEAVNLSLNGGVVEGRTAT
TNLLVFTVSVAANGDVTLDQLRAVVHPDATDPDDATSLSSDDLVTLTATITDKDGDSAQA
TLNIGQNLVFEDDGPSITITGTEPILTVDETVLTTDATQNFAANFSSAFGADGPGTLTYA
LGVVAGASGLTDTATGEAVNLSLNGGVVQGRTATTNLLVFTVSVAANGDVTLDQLRAVVH
PDATDPDDSTTLSADNLVTLIGTATDKDGDSAQATLNIGQNLIFKDDGPSLAFGNLIGTG
SVLPQFGFWDHSAGADGLGAAGLDISVNSQFTLVRPDNTTTTGTATLTEQSPSPDGNGAY
QFAGTLTGDFDNNAATADTSVDYTLTAYADGRYALDLVQGFSSEIVLSTADGALGAGGPD
PVRTLLIPEQDPPTIPSPSEEVVFFTAKALASTSDILTGIGLGEPDPTETTLQTDPLPSY
IDPRAMNVSTAGIGVANNLFQGDNLAAIGAADESFVVNPESLLTGMRVFIDNSVGGYNTA
TEDLYYRAFYEDGTFSNLIEVNTLTPEAGGQVSFLIESDGTNLIDAVQLTMARGEIKIPT
IQFIHETESLASDVQLTFNATLTDKDGDSATSTFDANLFANDLSGTFDFSLAGTGGERDA
FNIDLSVDENLYQVTGFDANASLRDTLVLNGDQSAVVQSIDISGADSIVTVAETGGQVTT
ITLVGVDLLSSDIVYGSV