Protein Info for Pf1N1B4_5091 in Pseudomonas fluorescens FW300-N1B4

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 transmembrane" amino acids 9 to 33 (25 residues), see Phobius details amino acids 39 to 57 (19 residues), see Phobius details amino acids 78 to 100 (23 residues), see Phobius details amino acids 106 to 127 (22 residues), see Phobius details amino acids 139 to 159 (21 residues), see Phobius details amino acids 165 to 183 (19 residues), see Phobius details amino acids 223 to 245 (23 residues), see Phobius details amino acids 251 to 267 (17 residues), see Phobius details amino acids 285 to 310 (26 residues), see Phobius details amino acids 316 to 342 (27 residues), see Phobius details amino acids 348 to 368 (21 residues), see Phobius details amino acids 371 to 390 (20 residues), see Phobius details amino acids 411 to 429 (19 residues), see Phobius details amino acids 435 to 457 (23 residues), see Phobius details PF01943: Polysacc_synt" amino acids 10 to 267 (258 residues), 40.7 bits, see alignment E=2.9e-14 PF13440: Polysacc_synt_3" amino acids 31 to 317 (287 residues), 159.4 bits, see alignment E=1.9e-50 PF14667: Polysacc_synt_C" amino acids 319 to 454 (136 residues), 35.5 bits, see alignment E=1.6e-12

Best Hits

KEGG orthology group: None (inferred from 84% identity to pfo:Pfl01_2823)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166QFB8 at UniProt or InterPro

Protein Sequence (472 amino acids)

>Pf1N1B4_5091 hypothetical protein (Pseudomonas fluorescens FW300-N1B4)
MANHRLVKLIWIFTEKFGLIFLSMITFVAYARLLSPTELGVGTVIIAIVELIGMMYSSVL
EDPLVRLERLEDKHIATAFWASVLVSLASIVVISGAAMLYTPNPMLQWMTAVASVKILFT
MMARVYVAQMRRSGNFRMLASRTLLGKVCGGVGGIAVALWGLGAWAVIAQALIMEFVSII
VLMRADPRRIAFYIDGPLLRELLRAGAPVAVNALSSQTLQRGVTVILGMTAGTNAVGMFN
MAMRIIDLPRTAIYHGLISYALPVFARRSADPSRLRAIISDSTAVSCFLLTPLFIGIALT
AHDLILLIFGAKWTEAIVLLQVLACTAAIGNTAMYATTALVAVNCSHLTIKAEVATTVLA
LALVYGFGSLYGGMAAALALLVRMAIITPLQIRGLNSAIGYGWRRFFETNYRSVIASFVM
AVIVLMVSSRLGVQGYLHLICSIVVGALSYAVAYSVMHPRWPQEFKSVFTTR