Protein Info for Pf1N1B4_5089 in Pseudomonas fluorescens FW300-N1B4

Annotation: Exopolysaccharide production protein ExoQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 transmembrane" amino acids 14 to 34 (21 residues), see Phobius details amino acids 50 to 68 (19 residues), see Phobius details amino acids 81 to 100 (20 residues), see Phobius details amino acids 106 to 124 (19 residues), see Phobius details amino acids 131 to 152 (22 residues), see Phobius details amino acids 177 to 193 (17 residues), see Phobius details amino acids 201 to 233 (33 residues), see Phobius details amino acids 245 to 266 (22 residues), see Phobius details amino acids 285 to 303 (19 residues), see Phobius details amino acids 333 to 353 (21 residues), see Phobius details amino acids 365 to 387 (23 residues), see Phobius details amino acids 396 to 406 (11 residues), see Phobius details PF04932: Wzy_C" amino acids 203 to 341 (139 residues), 37.4 bits, see alignment E=1.1e-13

Best Hits

KEGG orthology group: None (inferred from 72% identity to pfo:Pfl01_2821)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161Z8Y7 at UniProt or InterPro

Protein Sequence (437 amino acids)

>Pf1N1B4_5089 Exopolysaccharide production protein ExoQ (Pseudomonas fluorescens FW300-N1B4)
MNKLEVRYTNLRDAFTLFGVLFYIQVIGFFFGLADMSNLGAAEKDLEGNVVNQICGLITL
LVPLFFFIRNKVFISKSFYRHNAFLLIFMLSLAVSISWSYDPMLSFKRFVALISVVFFAG
FIAYNYRLEKIAFMLGSTIGAVALFGLIFALVRPDIVFIDGGIRDGAFKGIFPEKNAAAR
INAIAILLLLPLIRQRNPWAIIYSLFSLIAIALAQSATAIALIVAGTVSYWYFLTLIRLH
INRSLTAFLGTTIIYLLICLFLYGNYTLLLELMGRDASLTDRTLIWDLLTPLIDAEFLKG
YGFGAFWSSPDAETFINRWGYIGNAHSGYMETLLNGGVIQLTALILMLIEALIKHYRAVV
SDQSARFHASAMVIIGSFMLTNYVAYVVPNYRCAEFLVFCILALSFRHHHATYPELSRPT
LGQRPPGKALPRDSANA