Protein Info for Pf1N1B4_4999 in Pseudomonas fluorescens FW300-N1B4

Annotation: Sugar diacid utilization regulator SdaR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 376 PF05651: Diacid_rec" amino acids 4 to 134 (131 residues), 159.7 bits, see alignment E=6.5e-51 PF17853: GGDEF_2" amino acids 143 to 249 (107 residues), 33.8 bits, see alignment E=7.2e-12 PF13556: HTH_30" amino acids 307 to 364 (58 residues), 66.4 bits, see alignment E=3e-22

Best Hits

KEGG orthology group: K02647, carbohydrate diacid regulator (inferred from 95% identity to pfo:Pfl01_2909)

Predicted SEED Role

"Sugar diacid utilization regulator SdaR" in subsystem D-galactarate, D-glucarate and D-glycerate catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166QDG1 at UniProt or InterPro

Protein Sequence (376 amino acids)

>Pf1N1B4_4999 Sugar diacid utilization regulator SdaR (Pseudomonas fluorescens FW300-N1B4)
MFELDHDLAQDIVDRAMAILPYNVNVMDSQGLILGSGEPERINTRHEGAQLVLANGRVVE
IDAQTAIHLKGVQPGINLPLLLDQRLIGVLGITGEPEQLRTYAELVRMTAEMLVGQRNQQ
AEQQWRRQRCDDLLALLLSEAGDSPRLLDEAQQLGLKPQLTRVPYLFELGMEHGPGQTVE
ALSAWLMSRYPDSWCVSSAKSSLLWCRPATPAIENERLLEKLDGLGWNILRIAVGGQADG
LSGLRRCYRRVGDLLAYGRDVLPHSRLLTLNRYRLPVMLWRHRNDDALDELLRPLRKVIA
KDGNGQLLATLRSWCEHDGQSQACAEALGIHRNSLRYRMERIAELSGVDPLKLDGMLALY
LGVQLLPQTELPTAIP