Protein Info for Pf1N1B4_4986 in Pseudomonas fluorescens FW300-N1B4

Annotation: mannuronan C-5-epimerase, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1610 PF12708: Pect-lyase_RHGA_epim" amino acids 2 to 243 (242 residues), 84.3 bits, see alignment E=3.3e-27 PF05048: NosD" amino acids 93 to 228 (136 residues), 23.7 bits, see alignment E=9.1e-09 PF13229: Beta_helix" amino acids 132 to 228 (97 residues), 46.5 bits, see alignment 9.4e-16 amino acids 235 to 370 (136 residues), 33.3 bits, see alignment E=1.1e-11 TIGR03804: parallel beta-helix repeat" amino acids 181 to 218 (38 residues), 21.4 bits, see alignment (E = 1.6e-08) PF00353: HemolysinCabind" amino acids 383 to 411 (29 residues), 22.7 bits, see alignment (E = 2.4e-08) amino acids 413 to 439 (27 residues), 21.7 bits, see alignment (E = 4.8e-08) amino acids 535 to 570 (36 residues), 30.3 bits, see alignment (E = 1e-10) amino acids 554 to 587 (34 residues), 27.5 bits, see alignment (E = 7.3e-10) amino acids 795 to 830 (36 residues), 26.1 bits, see alignment (E = 2e-09) amino acids 824 to 848 (25 residues), 23.4 bits, see alignment (E = 1.5e-08) amino acids 1227 to 1260 (34 residues), 32.5 bits, see alignment (E = 2.1e-11) amino acids 1310 to 1343 (34 residues), 26.4 bits, see alignment (E = 1.7e-09) amino acids 1395 to 1422 (28 residues), 26 bits, see alignment (E = 2.2e-09) amino acids 1455 to 1483 (29 residues), 23.1 bits, see alignment (E = 1.8e-08) amino acids 1477 to 1509 (33 residues), 32 bits, see alignment (E = 2.9e-11) amino acids 1485 to 1510 (26 residues), 20.4 bits, see alignment (E = 1.2e-07) PF08548: Peptidase_M10_C" amino acids 406 to 476 (71 residues), 31.4 bits, see alignment (E = 5.1e-11) amino acids 554 to 629 (76 residues), 24.4 bits, see alignment 7.1e-09 amino acids 813 to 885 (73 residues), 26.2 bits, see alignment 2e-09 amino acids 1477 to 1606 (130 residues), 26 bits, see alignment E=2.3e-09 PF05345: He_PIG" amino acids 692 to 786 (95 residues), 76.8 bits, see alignment 4.4e-25

Best Hits

KEGG orthology group: None (inferred from 69% identity to psb:Psyr_3823)

Predicted SEED Role

"mannuronan C-5-epimerase, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161ZDV3 at UniProt or InterPro

Protein Sequence (1610 amino acids)

>Pf1N1B4_4986 mannuronan C-5-epimerase, putative (Pseudomonas fluorescens FW300-N1B4)
MIFNVQNFGAKGDGITDDTAAIQSAIDAAAAAGGGQVYMPSGTYIVSGGEEPSDGCLMLK
SNVYLYGDGMGATTVKVADGSDTKITGVIRSAYGEETHDFGVSNLTIDGNRDSTTGKIDG
WFNGYIPGEAGYDSNVTLDSVEIKDCSGYGFDPHEQTVNMVIKNSISHGNGLDGFVADFL
SNSTFENNIAYDNDRHGFNIVTSTHDFTLTNNVAYDNGGNGIVIQRGSEDIPSPSNITIT
GGEVYGNGAEGVLIKMSSEVTVSGVDIHDNTSAGIRIYGSNHVEIIDNTLNNNSLGSPVP
EIIIQSYNDTLGVSGKYFNGSDNTIQGNIITGSNLSTYGVAERNEDGTDRNAIIGNTISH
TSNGATLIYGDGSYVSATVPMTTVQGTAGNDTLLGSAASEIFYGVAGNDTINGGAGGDIL
VGGAGIDKLTGGTGADTFRFVAQSDSYRNATTSFDDTITDFDVTQDKIDLAGLGFTGLGN
GRGGTLQVSYSASSDRTYIKDYDADASGNRFELILSGNLASTLTASNFIFNRVVTGTSGS
DSLLGSDSADTLLGLAGNDSLSGGAGDDKLDGGAGMDTLTGGTGADIFVFSNRLDSYRNY
NTGGANLGDLITDFDISADKIDLSAMGFTGLGDGKNNTVYVVLNSAGTKTYIKSLTADAN
GNRFEVALDGNYLNTLTSANFVFATSPTVNHAPVVATALLDQNATENTPFSYAVPATSFT
DPDNDSLSYTATLADGSALPAWLGFNATNLTFTGTPTGTASGNYNVLVKATDPAGASVSD
SFALVVADAPANTITGTNNAETLNGTAGADLILGLGGNDTIKAGTGADIVDGGAGRDSLY
GGDGADTFRYTNVLDSYRDYDTGGVTVTDTIYDFTIGVDKIDVSGPGFEGLGDGRNGTLY
VTLNAAGDKTYIKSAEADADGNRFEIALSGNYLNTLTASDFVFGESVQQDILYLPTLGQS
NARLLRMTEDDNQSGTSMLVNDLDRYTAYDVRSQFTDANGNGIDIAVGGSTVTGLSTLSA
EELKLCWWLTDTNQPGAALLRAVTLLRDQLTELQSIDNVTMGIIWGQGEEAAQEIARATD
KVAAAAAYKAATLKVFDYLHAQFGNFNVYLMETGHYEQDAARARGYSEEKIASIVEGVGY
VRAAQEAIAAERADVKLAVDYTDLPLRHEIDPLAYPDDVWHLHEESAEIVGQRLADYIAN
DLGFQGNSNDNNSVQDIFDNAQNMISGTDQADTLVGSPGNDTLDGKLGADTMTGGDGNDV
YVVDNASDRVVETNTSTSQIDTVQASVSWTLGANLENLLLTGVSAINGTGNERHNFITGN
AANNVLDGAAGDDSMSGGDGNDTYYVDNANDTVIEINSNAAPGGGDSVHSSLAAYTLANN
VEHLYVDSTGAANGTGNALDNTLFAGAGNNVLDGRDGNDTVSFERALSGVTVNLSTSAQQ
NTVGSGLDTLKFVENLTGSAYADSLSGNSAANVLNAGAGNDTLVGGSGNDRLIGGAGTDN
LTGGTGTDTYAFGALSDMGIGALRDVINGFKSTEGDLLDFTGLDANPLTTAVDAFTFVGS
NAFDPADATGQLRFADGILYGSVDADAIPEFEIQLVGVQELHASDFTALG