Protein Info for Pf1N1B4_4958 in Pseudomonas fluorescens FW300-N1B4

Annotation: Protein containing domains DUF404, DUF407

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 443 PF14403: CP_ATPgrasp_2" amino acids 46 to 419 (374 residues), 556.2 bits, see alignment E=3.4e-171 PF04174: CP_ATPgrasp_1" amino acids 46 to 375 (330 residues), 515.4 bits, see alignment E=6e-159

Best Hits

KEGG orthology group: None (inferred from 94% identity to pba:PSEBR_a2783)

Predicted SEED Role

"Protein containing domains DUF404, DUF407"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166QCF2 at UniProt or InterPro

Protein Sequence (443 amino acids)

>Pf1N1B4_4958 Protein containing domains DUF404, DUF407 (Pseudomonas fluorescens FW300-N1B4)
LADTPLELLDQRRREADLLFHRAGITFTLYGDEQGTERLIPFDIIPRSITAREWQTVERG
CIQRVQALNMFLADIYHGQRILKEGIIPAEQVLANEGYQVAMQGLNLHRGIYAHISGVDL
VRDGDGSYYVLEDNLRTPSGVSYMLEDRKMMMRLFPELFAAQRVAPIDHYPNLLLDTLKS
SSPLDNPTAVVLTPGRFNSAYFEHAFLAREMGVELVEGADLFVRDDHVYMRTTAGPKQVD
VIYRRLDDAFLDPLSFNPDSMLGVPGLVAAYRSGNVVLANAIGTGVADDKSIYPYVDDMI
RFYLSEEPILKNVPTWQCRKPEELSHVLAHLPELVVKETQGSGGYGMLVGPAATAAEIED
FRARLKARPEAYIAQPTLCLSTCPTFVENGIAPRHIDLRPFVLSGSETRLVPGGLTRVAL
REGSLVVNSSQGGGTKDTWVVED