Protein Info for Pf1N1B4_4842 in Pseudomonas fluorescens FW300-N1B4

Annotation: VgrG protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 690 TIGR03361: type VI secretion system Vgr family protein" amino acids 11 to 524 (514 residues), 666.9 bits, see alignment E=1.8e-204 TIGR01646: Rhs element Vgr protein" amino acids 21 to 506 (486 residues), 426.2 bits, see alignment E=2e-131 PF05954: Phage_GPD" amino acids 28 to 322 (295 residues), 269.6 bits, see alignment E=3.5e-84 PF04717: Phage_base_V" amino acids 388 to 455 (68 residues), 53.1 bits, see alignment E=3.3e-18

Best Hits

KEGG orthology group: None (inferred from 87% identity to pst:PSPTO_4385)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166QA02 at UniProt or InterPro

Protein Sequence (690 amino acids)

>Pf1N1B4_4842 VgrG protein (Pseudomonas fluorescens FW300-N1B4)
MLDANATHISLTLEGVSVDLQVLSFVGREALNQPFCFDIELVSARPDLKLEELLHKSGCL
TFGATGQGKIHGLVYRIEQGDSGKSLTRYSISLVPQLAYLRHNHDQQIFQQLSVPKIIAQ
VLEARGILADAYSFQLGAIYPERVYCVQYDESDLHFIQRLCEEEGIHFHFQHSTSGHKLV
FGDDQTVFRKLAPVSYQQDSGMAAKKPVIKRFNLRLETRTTRVSRRDYDFEKPRLLPEGA
AKSAFAPDLEDYDYPGRFIDRARGKQLATRALERHRSDYQLAEGKGDEPTLVSGHFMALS
EHPRAEWNDLWLLLEIVHEGKQPQVLGENITSDVTHNKDDFHQGYRNRFLATPWDAHYRP
ALEHPKPKVLGSQTAIVTGPAGEEIHCDEYGRVKVQFHWDRDGQGHDTSSCWLRVATGWA
GNAYGGIAIPRIGMEVLVTFLEGDPDQPLITGCLYHKENVVPYDLPANKTRSTFKTLSSP
GGKGYNEFRIEDKKGAEQIYLHAQRDWDENIEHDQKIRIGNERHDTVEANAFSEFKVEEH
RLTHLDRTTEARADDHLTVGVTRHVKVGTAQFVEAGTEIHYHAGEKVVVEGGMELTAKAG
GSFVKIDAGGVTISGAEVKVNSGGAPGAGTGIQILDPVIPWAAAKDKAGALLVPAAVQMA
MAKAARAAGDIRCPICEACREGKCDLGATA