Protein Info for Pf1N1B4_4823 in Pseudomonas fluorescens FW300-N1B4

Annotation: Paraquat-inducible protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 198 transmembrane" amino acids 49 to 70 (22 residues), see Phobius details amino acids 93 to 124 (32 residues), see Phobius details amino acids 144 to 162 (19 residues), see Phobius details amino acids 168 to 187 (20 residues), see Phobius details PF04403: PqiA" amino acids 47 to 197 (151 residues), 135.9 bits, see alignment E=5.5e-44

Best Hits

KEGG orthology group: K03808, paraquat-inducible protein A (inferred from 89% identity to pfo:Pfl01_2441)

Predicted SEED Role

"Paraquat-inducible protein A" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166Q9N7 at UniProt or InterPro

Protein Sequence (198 amino acids)

>Pf1N1B4_4823 Paraquat-inducible protein A (Pseudomonas fluorescens FW300-N1B4)
MATTDQLIICEHCDCVYEKVTLAKHQKALCTCCGGVLQRYNGLSVEQRLALAFTATVLWI
FANFYPVMSISLKGLKNSATLWDSVLALSQGPITFIALVAAISIIIAPLFQLVLLIWVLS
FALVHRRSPGFKLCMRWLETLRPWSMLEVCLLGAMVAVFKLAGLLDVIPGLGLFALAVLS
LLLIRIAGRDVRDLWDTL