Protein Info for Pf1N1B4_4821 in Pseudomonas fluorescens FW300-N1B4

Annotation: Paraquat-inducible protein B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 551 transmembrane" amino acids 25 to 46 (22 residues), see Phobius details PF02470: MlaD" amino acids 50 to 120 (71 residues), 46.4 bits, see alignment E=1.9e-16 amino acids 165 to 225 (61 residues), 36.4 bits, see alignment E=2.6e-13 amino acids 293 to 403 (111 residues), 43.2 bits, see alignment E=2e-15

Best Hits

KEGG orthology group: K06192, paraquat-inducible protein B (inferred from 85% identity to pfo:Pfl01_2831)

Predicted SEED Role

"Paraquat-inducible protein B" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166Q9I6 at UniProt or InterPro

Protein Sequence (551 amino acids)

>Pf1N1B4_4821 Paraquat-inducible protein B (Pseudomonas fluorescens FW300-N1B4)
MKSQATDGPQDPCQASIKTRRFSVSLVWIVPIVAVLVGISLVIHSMMQEGPTITVTFKTG
SGLTANKTEVKYRSVVIGHVSEVKLSNDQKSVNATIKLDKQAENFTREDSQFWVVRPRIG
AGGVSGIDTLLSGDYIGADIGVANIRSKHFIGLENPPPITYGEPGKRFMLHTQDLGSLDI
GSPVYYRKIPVGQVVAYALNADGKGVNIEIFVHSPNDVFVTQNTRFWNASGIDVSVGANG
FAVSTESLSSLLVGGIAFRAPEYSPNDQPASENKAFDLFEDQQTALAPPFGKGQYLSLRF
DQALRGLKIDAPVEFLGIEFGRVVSVNLDFDAKKRSFPVNVGIVIYPQRLGQAHTKMLEA
LKHDPNDEAAGVRLMGSFIENGLRAQARSGNLLTGQLYIALDFYPDAEKVVFDPTARPVT
IPTIPGSLEQLQEKLENMVNKINQLPIDRIAGNLDSNLVELRKGLVQFNARTLPGVQTTL
GDVSKALQSASSTLAEDSPQREQLTQTLDELGRMSRSLRELSDYLGRHPESLIRGRPDNA
APMDMKAPPRN