Protein Info for Pf1N1B4_4819 in Pseudomonas fluorescens FW300-N1B4

Annotation: Multidrug resistance protein B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 50 to 73 (24 residues), see Phobius details amino acids 85 to 110 (26 residues), see Phobius details amino acids 114 to 131 (18 residues), see Phobius details amino acids 142 to 165 (24 residues), see Phobius details amino acids 171 to 192 (22 residues), see Phobius details amino acids 219 to 237 (19 residues), see Phobius details amino acids 257 to 276 (20 residues), see Phobius details amino acids 288 to 308 (21 residues), see Phobius details amino acids 314 to 336 (23 residues), see Phobius details amino acids 348 to 371 (24 residues), see Phobius details amino acids 379 to 400 (22 residues), see Phobius details PF07690: MFS_1" amino acids 19 to 341 (323 residues), 129.8 bits, see alignment E=1.2e-41 amino acids 293 to 404 (112 residues), 44 bits, see alignment E=1.5e-15 PF00083: Sugar_tr" amino acids 56 to 196 (141 residues), 31.1 bits, see alignment E=1.2e-11

Best Hits

KEGG orthology group: None (inferred from 58% identity to pwa:Pecwa_4078)

Predicted SEED Role

"Multidrug resistance protein B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161Z8C4 at UniProt or InterPro

Protein Sequence (414 amino acids)

>Pf1N1B4_4819 Multidrug resistance protein B (Pseudomonas fluorescens FW300-N1B4)
MSHTGTLQGSSVRILIYLLFAIQLISMGAMEMSGPFWPVHLRGLTSSESVFSFASIAVYV
GPMLGIMLTSAFWGRIGDRYGHKLMMIRALAGLSLTQLGLALCSDIWVILLLRFLQGAFA
GYIAPAQAYGVSIEAPSRRARLFAILQISTNVGSLLGAVVGGLILDYATFFWINIIASAL
CAICTVVAAVTLPDVPPVKKAPVVDATAPVKRSRNVWQGSPLLSLLGVMGILLLARMLPQ
TSFSLYVSSVFEVRNSVVGLCYGLLALGFIISAAPWSRYFEHRSQQDTLHRITCIVIGCI
GLTAVAGITRNPVVFVIAYFVWGVLLGATTPVLMALISKTADSSQQGYVLGIAQSTAQFA
SIAGISAGGLLSQVYGLQYTYLFVCLAYVVALIPIVALRYWPVVMQPSQVPPGD