Protein Info for Pf1N1B4_4729 in Pseudomonas fluorescens FW300-N1B4

Annotation: Hemolysin-type calcium-binding region

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 TIGR02608: delta-60 repeat domain" amino acids 41 to 86 (46 residues), 23.6 bits, see alignment 1.8e-09 amino acids 100 to 150 (51 residues), 20.1 bits, see alignment 2.3e-08 amino acids 171 to 221 (51 residues), 36.2 bits, see alignment 2.1e-13 amino acids 231 to 277 (47 residues), 29.8 bits, see alignment 2.1e-11 amino acids 342 to 386 (45 residues), 28.7 bits, see alignment 4.7e-11 amino acids 397 to 427 (31 residues), 14.4 bits, see alignment (E = 1.3e-06) PF17164: DUF5122" amino acids 50 to 81 (32 residues), 18 bits, see alignment (E = 1.5e-07) amino acids 200 to 213 (14 residues), 16 bits, see alignment (E = 6.1e-07) amino acids 236 to 268 (33 residues), 21.5 bits, see alignment (E = 1.2e-08) amino acids 346 to 380 (35 residues), 22.5 bits, see alignment 5.6e-09

Best Hits

KEGG orthology group: None (inferred from 67% identity to pfo:Pfl01_2590)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162B064 at UniProt or InterPro

Protein Sequence (429 amino acids)

>Pf1N1B4_4729 Hemolysin-type calcium-binding region (Pseudomonas fluorescens FW300-N1B4)
MSPQTAFALPATVNGAERLDASFAGTGKTQVYFSGSLSSMANDIAIDPVGRLLVAAKVGT
PGGHRFGLARLLADGSADLAFGKQGSISGQFAHGFEAMAGKVRVLADGHILVAGLHYENA
HRTLPALAMFDQQGCLVQGFGDNGYCVVRLPGDLSRGARDAWLPRGTPGTEACDVCVQDD
GRILLLANHHFDPADHAGMLIRLNADGSLDDSFNGRGFVMVRHLLMNTWLCSLMVQRDGR
ILVSGTINVPEEGLLARYHPDGRLDDRFAMDGFMTFKAREHSARACQIVQHENGDLHCFG
SSRDPMLCLSLKVHSNGRPDIHCNGGQPKLLGVGRSDCHWTAAGVQPDGRVLTVGATVGE
VEADLVFARYLPSGQLDRSFAKGIGWCRTHLSRGSHTATSLAIQANGCIVIGGYSLDGNC
RAVVARYRC