Protein Info for Pf1N1B4_47 in Pseudomonas fluorescens FW300-N1B4

Annotation: Copper resistance protein D

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 48 to 70 (23 residues), see Phobius details amino acids 92 to 111 (20 residues), see Phobius details amino acids 117 to 135 (19 residues), see Phobius details amino acids 155 to 175 (21 residues), see Phobius details amino acids 196 to 218 (23 residues), see Phobius details amino acids 230 to 253 (24 residues), see Phobius details amino acids 280 to 299 (20 residues), see Phobius details PF05425: CopD" amino acids 191 to 297 (107 residues), 85.5 bits, see alignment E=1.6e-28

Best Hits

Swiss-Prot: 60% identical to COPD_PSESF: Copper resistance protein D (copD) from Pseudomonas syringae pv. actinidiae

KEGG orthology group: K07245, putative copper resistance protein D (inferred from 63% identity to pfo:Pfl01_3813)

Predicted SEED Role

"Copper resistance protein D" in subsystem Copper homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166ME43 at UniProt or InterPro

Protein Sequence (309 amino acids)

>Pf1N1B4_47 Copper resistance protein D (Pseudomonas fluorescens FW300-N1B4)
MSDSVSIALRFALYVDLMLLFGVALFGLYSLKGQERLSGAVLPFRSMLAGTAVLGALLSV
ASMVMMASAMSGESDFAELRPHIEMMLFETNVGLAWGVRIVALVVAGLAVMLRAPGFSLW
VAAFAGGVALSSLAWNGHGAMDEGSRRFWHFTVDILHLLTAGAWLGALMAFALMAKINAL
QTEARIKLLARAVNRFEVIGAVIVVLITVTGVVNYLFIVGPKLDEVFLSTYGVLLFIKVV
LFAGMLVLAALNRFHLGPLLERSLRDGQYAVAANALRRSVVVEWVAAVLIVGLVAWLGTL
SPEMEMAAQ