Protein Info for Pf1N1B4_4521 in Pseudomonas fluorescens FW300-N1B4

Annotation: Probable transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 144 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 56 to 76 (21 residues), see Phobius details amino acids 82 to 101 (20 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details PF04143: Sulf_transp" amino acids 8 to 132 (125 residues), 27.3 bits, see alignment E=1.3e-10

Best Hits

KEGG orthology group: K07112, (no description) (inferred from 72% identity to pba:PSEBR_a2509)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166Q3C4 at UniProt or InterPro

Protein Sequence (144 amino acids)

>Pf1N1B4_4521 Probable transmembrane protein (Pseudomonas fluorescens FW300-N1B4)
MMLDSLHFTPWSALAGGVLIGLAASVMVVANGRVAGISGLLGSLLERNDSGRGEKALFLL
GLLAAPLLWALFYVWPAIEFKTGTVGLIIAGLCVGVGTRYGSGCTSGHGVCGISRLSPRS
IAATLSFMFAGFVTVFVLRHLLGY