Protein Info for Pf1N1B4_4473 in Pseudomonas fluorescens FW300-N1B4

Annotation: Homoserine/homoserine lactone efflux protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 41 to 63 (23 residues), see Phobius details amino acids 70 to 86 (17 residues), see Phobius details amino acids 117 to 141 (25 residues), see Phobius details amino acids 147 to 168 (22 residues), see Phobius details amino acids 180 to 199 (20 residues), see Phobius details PF01810: LysE" amino acids 14 to 199 (186 residues), 101.2 bits, see alignment E=2.6e-33

Best Hits

KEGG orthology group: None (inferred from 65% identity to pba:PSEBR_a2593)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166Q2A7 at UniProt or InterPro

Protein Sequence (202 amino acids)

>Pf1N1B4_4473 Homoserine/homoserine lactone efflux protein (Pseudomonas fluorescens FW300-N1B4)
MNSYGLFVLFATLTILSPGPGVVLTLSNALRHGWTGALPGILGVASGAFVVAAISATSVG
LILSTSANAFTALKYAGAAYLLYLGYKSWRSDRFSTLLETRPSSPGYRFLEAASMQLLNP
KAVFFFLAVFPQFIDTSAHFYTQFIKLVASYGVLVILVHGSYALLANAAKGWLSSPKGSW
LAAKVSGVTFAGFGVLMASSSR