Protein Info for Pf1N1B4_4467 in Pseudomonas fluorescens FW300-N1B4

Annotation: peptidyl-prolyl cis-trans isomerase, FkbP-type

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 112 PF00254: FKBP_C" amino acids 17 to 105 (89 residues), 115.5 bits, see alignment E=5.7e-38

Best Hits

Swiss-Prot: 54% identical to FKBP_NEIMA: FK506-binding protein (fbp) from Neisseria meningitidis serogroup A / serotype 4A (strain Z2491)

KEGG orthology group: None (inferred from 88% identity to pfv:Psefu_3159)

Predicted SEED Role

"peptidyl-prolyl cis-trans isomerase, FkbP-type"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166Q207 at UniProt or InterPro

Protein Sequence (112 amino acids)

>Pf1N1B4_4467 peptidyl-prolyl cis-trans isomerase, FkbP-type (Pseudomonas fluorescens FW300-N1B4)
MNDELQVIDLEVGDGKAAVKGALITTQYRGWLEDGTEFDSSYSRGKPFQCVIGTGRVIKG
WDQGIMGMQVGGKRKLLVPAHLAYGERTMGAITPNSNLIFEIELLEVLTRDD