Protein Info for Pf1N1B4_4377 in Pseudomonas fluorescens FW300-N1B4

Annotation: Cell wall hydrolyses involved in spore germination

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF07486: Hydrolase_2" amino acids 95 to 198 (104 residues), 83.1 bits, see alignment E=9.3e-28

Best Hits

KEGG orthology group: None (inferred from 75% identity to pfo:Pfl01_3383)

Predicted SEED Role

"Cell wall hydrolyses involved in spore germination"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166PZY7 at UniProt or InterPro

Protein Sequence (206 amino acids)

>Pf1N1B4_4377 Cell wall hydrolyses involved in spore germination (Pseudomonas fluorescens FW300-N1B4)
MRFKWVLTCFAIILLGGQVLATEQEQKQEVAEDKAQVLEEKAAEKDSELPVPKSEVITPS
EVQAVDPAGAAPLDDAITCLARSIYWESKGVAGADMEAVASVVMNRLGHEGFPDTVCAVV
KQGSETGSCQFSWWCDGRADQVKEDDEYALAKEIARKALNKQLTDRTHGALYFHDRTVKP
AWAKKYAKTAETRKFLFYKPRGGTAK