Protein Info for Pf1N1B4_436 in Pseudomonas fluorescens FW300-N1B4

Annotation: Cell division protein FtsH (EC 3.4.24.-)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 312 PF00004: AAA" amino acids 77 to 224 (148 residues), 56.7 bits, see alignment E=1.9e-19

Best Hits

KEGG orthology group: None (inferred from 76% identity to mes:Meso_4406)

Predicted SEED Role

"Cell division protein FtsH (EC 3.4.24.-)" in subsystem Bacterial Cell Division (EC 3.4.24.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.24.-

Use Curated BLAST to search for 3.4.24.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MM69 at UniProt or InterPro

Protein Sequence (312 amino acids)

>Pf1N1B4_436 Cell division protein FtsH (EC 3.4.24.-) (Pseudomonas fluorescens FW300-N1B4)
MSTKPTLDELFENRVNYPDFEPQARLARLVGLDEQKLRLTKVLGLLVNSTGLTEWANNFH
PNSVAVLETVLRRPPLVVLAGDVGSGKSELGETIGDAVARQEKIGITLFPLSLSTRGQGR
VGEMTQLISAAFDYTIEEAQKLKSKEGRSRGAVILLVDEADALAQSRENAQMHHEDRAGV
NAFIRGIDRIANAQLPAAVIMCTNRLNSLDPAVRRRAAEVLTFDRPNDEQRRYILTRQLG
TLGIPASIIEAMVKFTGPKDGNAPGFTFSDLTQRLIPSIVLDAYPTQAVDPIRAVEIARK
MDPTPPFQDHLR