Protein Info for Pf1N1B4_4341 in Pseudomonas fluorescens FW300-N1B4

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 transmembrane" amino acids 30 to 47 (18 residues), see Phobius details amino acids 53 to 70 (18 residues), see Phobius details amino acids 78 to 98 (21 residues), see Phobius details amino acids 129 to 147 (19 residues), see Phobius details amino acids 155 to 176 (22 residues), see Phobius details amino acids 206 to 224 (19 residues), see Phobius details PF09997: DUF2238" amino acids 61 to 209 (149 residues), 160.6 bits, see alignment E=1.1e-51

Best Hits

Swiss-Prot: 35% identical to YJDF_ECOLI: Inner membrane protein YjdF (yjdF) from Escherichia coli (strain K12)

KEGG orthology group: K08984, putative membrane protein (inferred from 58% identity to pba:PSEBR_a3222)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162AZ95 at UniProt or InterPro

Protein Sequence (232 amino acids)

>Pf1N1B4_4341 hypothetical protein (Pseudomonas fluorescens FW300-N1B4)
MSKSIGAKDLSAHSRPLPVMTPKEHPRYDLALLIAFLLIIAALGISPHSRVDWVLENLLA
LLLVMVLVGVSRRFRLSAVSISLVFVFLCIHELGSHYTYALVPYDRWCSALTGVSLNKTL
GFERNHYDRLVHLTYGLLLVYPIREVLVRITPLRGFWVGFVALNIVLSTSAVYEIVEWIG
GQFLGKDTAKAFVAAQNDPWDSQADMALAVAGAFFTLLVARFWRGFFIKTLD