Protein Info for Pf1N1B4_4282 in Pseudomonas fluorescens FW300-N1B4

Annotation: Myo-inositol 2-dehydrogenase (EC 1.1.1.18)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 transmembrane" amino acids 15 to 32 (18 residues), see Phobius details PF01408: GFO_IDH_MocA" amino acids 1 to 119 (119 residues), 67.7 bits, see alignment E=1.5e-22 PF02894: GFO_IDH_MocA_C" amino acids 132 to 339 (208 residues), 79.7 bits, see alignment E=2.9e-26

Best Hits

KEGG orthology group: None (inferred from 77% identity to pfs:PFLU2581)

Predicted SEED Role

"Myo-inositol 2-dehydrogenase (EC 1.1.1.18)" in subsystem Inositol catabolism (EC 1.1.1.18)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.1.1.18

Use Curated BLAST to search for 1.1.1.18

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166PXQ6 at UniProt or InterPro

Protein Sequence (350 amino acids)

>Pf1N1B4_4282 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) (Pseudomonas fluorescens FW300-N1B4)
MRIGLVGYGHGGRFFHAPLISSLPAASFVGVVTRSAERRQLLATEHPGVPAFDSIGQLVE
AGVDVLVISTPLKGRPALVLDAIEHEVAVVSDKPFAADAQQAQTLITMAERQGVQLSVYQ
NRRWDSDFLTVRKLIESGALGRVTRFESRIERYSPQSVNNGSGGGFLRDLGSHLVDQALL
LFGPVTRVYAELDYLEKGQPFDNGFFMSLTHASGVISHLGGSCLQNTPGPRFRVTGTQGC
YSVDGLDGQEASTLAGLTPKSEGERWGVEEHRRWGWFEQGEVRERVPSERGCWNQFYLQL
QTALQSGGPLPVDARDALATTRVLDAARLSFERHQVVALSPFESHGIKSE