Protein Info for Pf1N1B4_426 in Pseudomonas fluorescens FW300-N1B4

Annotation: Site-specific recombinase, phage integrase family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 682 PF00589: Phage_integrase" amino acids 327 to 491 (165 residues), 60.3 bits, see alignment E=1e-20

Best Hits

KEGG orthology group: None (inferred from 48% identity to ppu:PP_1962)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MLX1 at UniProt or InterPro

Protein Sequence (682 amino acids)

>Pf1N1B4_426 Site-specific recombinase, phage integrase family (Pseudomonas fluorescens FW300-N1B4)
MTDFNATEIPDDEDSLDAKLIAEFELDRQDAALSELADLIHESNVAPGSNIGLAKKLELD
PTGSFSVSDYARYSDPVWPFENANNTFPNRVKFDRTQEGSNTLKRAIIFHLIPDFSPFNA
IRSYSTTRSKGYAYRVLEKYVFQANKLNATPAHIQIISTPMLLAALDEAKNSQASSDYRE
LYFFIRFWGALSAQKLIPPELCLQADLRKIDTKERQRDIVAHFTGLMQTWVPYSESDLEK
LMDYSLFWLEEAIPHVLAAKRHIEENSYQKIAGYSIGRAQELPTFEKLFNVEIKGKKVLG
YAKRIATHKRSPQYNYTWIADYGITLDHIRNAIFIMLALVTGMRKSELSRVKFGHVYTDE
NGVFWITVTRTKTSKDPIYKGETQALPLPEFVGSKIREFEELRSIEPFKREGFLFQANQS
VKPLNKATPAIINTLIIQLKSQINVDRIHCHRFRKTIAEILINRDERNIDLIRFLFGHHS
YTMSMKYIARNPYLVRSVAQALEENFTHEFHEIVSAVRDGAYSGETANRLASQIAERPAD
FSGKQLKTSILVYVTHLITSGEPIFINRTAMGTYCVSAEHFTIENLPPCLKGKTLIDENL
MPDPSNCQIECRHAVVVEKAKQSIQDNIVFYKALLSNATGGISKSVKTSLLKRIEAHESH
LENLNNSKQSKQRLISLMEASA