Protein Info for Pf1N1B4_4247 in Pseudomonas fluorescens FW300-N1B4

Annotation: D-aminopeptidase (EC 3.4.11.19)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 371 PF03576: Peptidase_S58" amino acids 21 to 350 (330 residues), 374.9 bits, see alignment E=1.9e-116

Best Hits

KEGG orthology group: K01266, D-aminopeptidase [EC: 3.4.11.19] (inferred from 90% identity to ppu:PP_3844)

Predicted SEED Role

"D-aminopeptidase (EC 3.4.11.19)" (EC 3.4.11.19)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.4.11.19

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166PWV8 at UniProt or InterPro

Protein Sequence (371 amino acids)

>Pf1N1B4_4247 D-aminopeptidase (EC 3.4.11.19) (Pseudomonas fluorescens FW300-N1B4)
MKPRARDLNIQFGQLQPGPLNAITDVPGVRVGHSNVRGQTASGRDIYTGVTLIEPRAGSA
NQQPCFAGVHVLNGNGDATGLEWMREAGLLTSPIAFTNTHSLGIVRDALIVLDRQEQPDD
GRLYWNMPVVLETFDGLLNDINGFHVRPEHVAEALRAAVGGPVIEGAVGGGSGMICHEFK
GGIGTASRRLNSAQGGWTVGAIVQANHGIRHELRVDGYPVGRYMEQVDSPFLKASLPHPG
MGSIVVCLATDAPLLPHQCTRLAQRASLGLARTGGGNEDHSGDIFVAFATGNQHVPPAAY
EGKGAPTCDHLRMVNNDHISELFLAATEAVEEAIINALLAANTTEGNGHTVPGLDANTLL
KALRQAGWPGD