Protein Info for Pf1N1B4_4220 in Pseudomonas fluorescens FW300-N1B4

Annotation: Maebl

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 249 PF01936: NYN" amino acids 8 to 126 (119 residues), 127.2 bits, see alignment E=7.5e-41 PF12872: OST-HTH" amino acids 164 to 234 (71 residues), 70.4 bits, see alignment E=9.7e-24

Best Hits

KEGG orthology group: None (inferred from 66% identity to pmk:MDS_3996)

Predicted SEED Role

"Maebl"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (249 amino acids)

>Pf1N1B4_4220 Maebl (Pseudomonas fluorescens FW300-N1B4)
MPPAAIVEGLFEEIAKYGVANVKRIYGDWTGPQLGGWKKVLLDHSIQPIQQFAYTKGKNA
TDSALIIDAMDLLYTRRFDGFCLVSSDSDFTRLASRLREEGLTVYGFGEEKTPRPFVSAC
DKFIYTELLRGEVLVAASNGHGRPEPEPPVEIEAVKVACTPEVKKLPKAPVSFIAKILDD
IADEDGWAHLGALGTNISKLRPEFDPRTHGYKKLSELIKGYPDMFELQTRGTSGVGGSIL
YARHRQPSS