Protein Info for Pf1N1B4_4190 in Pseudomonas fluorescens FW300-N1B4

Annotation: transcriptional regulator, AraC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 397 PF12833: HTH_18" amino acids 109 to 188 (80 residues), 68.3 bits, see alignment E=1.2e-22 PF00165: HTH_AraC" amino acids 152 to 187 (36 residues), 28.9 bits, see alignment 2e-10 PF06445: GyrI-like" amino acids 242 to 395 (154 residues), 120.9 bits, see alignment E=1.2e-38 PF14526: Cass2" amino acids 245 to 394 (150 residues), 69.9 bits, see alignment E=6.1e-23

Best Hits

KEGG orthology group: K13652, AraC family transcriptional regulator (inferred from 87% identity to dac:Daci_3099)

Predicted SEED Role

"transcriptional regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166QJD1 at UniProt or InterPro

Protein Sequence (397 amino acids)

>Pf1N1B4_4190 transcriptional regulator, AraC family (Pseudomonas fluorescens FW300-N1B4)
LILWWSQVAGCPGAGDAGESAGLIEATEFCLSGRAAVGRERALKLFGRIGRAAVVAGTQR
LNSHMNGDLPNMMTKSSAQTSRAEYTRRINRVLNYIDAHLDQPLDGAQLADIANFSRFHF
HRVFAAWMGETLGSYAQRRRLEKAAFRMSCGSNETVLETALATGFHSGEAFARAFKLKFG
CTPSAWRSTTLQRLKTQAAAIGQQPGSQESNPDQVFGNIHQEDERALGESDVSYRLAEEI
AMDVRIIDLPKARVAYQRLIGPYGPAIGEFWRGAIAPWMHSNGLSDETCYGIAYDDPSLT
PANKCRYDACVEVPAHFVASGQADIQALPGGRYAVASFKGKVENLANAWMWLTREWMPSS
GLQCDDRPCFEMFSAPTALDLQTGELSCDICIPVRAL