Protein Info for Pf1N1B4_4182 in Pseudomonas fluorescens FW300-N1B4

Annotation: Universal stress protein family 5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 PF00582: Usp" amino acids 19 to 145 (127 residues), 29.5 bits, see alignment E=5.1e-11 amino acids 155 to 301 (147 residues), 65.2 bits, see alignment E=4.8e-22

Best Hits

KEGG orthology group: None (inferred from 82% identity to pfo:Pfl01_3347)

Predicted SEED Role

"Universal stress protein family 5" in subsystem Universal stress protein family

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166PV56 at UniProt or InterPro

Protein Sequence (306 amino acids)

>Pf1N1B4_4182 Universal stress protein family 5 (Pseudomonas fluorescens FW300-N1B4)
MSEQLRFMLLVSPLMENSPAFDRAAALAKAAGAALHIVAFDYLEGLATASLVNEQVLEQM
RLGYVERHRQWLEEQARPLRKIGVPVTTEVVWVERPLQEILVHLKEQPMAVLIKALEYES
LLSRIMFTPLDIHLLRECPVPLHFVSHVQHALPRKIVAAVDPFHSNTQYKDFNDRIVREA
SKLASTCNAELDVIYAHDLSSISADEFDFDNSSTFFSSGKAKTLFDAQADAFRELAERNG
IAPEQQHMIMGNPAKVLTHYADAYNVDVIVMGRVGHRGMGRLVGSTVEHLLYKMPCSVWV
VSPEDL