Protein Info for Pf1N1B4_4094 in Pseudomonas fluorescens FW300-N1B4

Annotation: Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 165 PF03928: HbpS-like" amino acids 22 to 149 (128 residues), 101 bits, see alignment E=2.6e-33

Best Hits

Swiss-Prot: 52% identical to Y2932_AZOVD: UPF0303 protein Avin_29320 (Avin_29320) from Azotobacter vinelandii (strain DJ / ATCC BAA-1303)

KEGG orthology group: None (inferred from 60% identity to lch:Lcho_0452)

Predicted SEED Role

"Uncharacterized conserved protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166PSY0 at UniProt or InterPro

Protein Sequence (165 amino acids)

>Pf1N1B4_4094 Uncharacterized conserved protein (Pseudomonas fluorescens FW300-N1B4)
MDIKTDLQRIALQEETLKFERFDKATAWDLGTRLKSACEEQGVSATIEVRLARDTVFFYS
MPGTSASNADWARRKRNVVELMELSSYRVGRSFALQGDSLEGLMGLPLRDYADHGGSFPI
SVKGVGCIGAVTVSGLPQREDHALVVQVLAQMCGADPSELAFEGE