Protein Info for Pf1N1B4_3998 in Pseudomonas fluorescens FW300-N1B4

Annotation: putative exported protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1224 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF04357: TamB" amino acids 899 to 1224 (326 residues), 188.6 bits, see alignment E=1.1e-59

Best Hits

KEGG orthology group: K09800, hypothetical protein (inferred from 88% identity to pfo:Pfl01_3646)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166PQ82 at UniProt or InterPro

Protein Sequence (1224 amino acids)

>Pf1N1B4_3998 putative exported protein (Pseudomonas fluorescens FW300-N1B4)
VKRGLKITLLAIPALLMLIVLTLVSVLGTPTGSRWALGFVPGLTVENFQGRLGGQWSADH
LVWQQDSSRVELNKAIFAWSPLCLMRMTLCIEQLQAEQVSLQFPPGVEEESSGPISLPDL
KLPLAIELGDVKIGRLLFNGSEELKGLQLAAHWTEKGLQIDSVHLQRDELSLNLSGLLQP
SGNWPLTAEGKLTLPAPGTEPWTLALKVDGDLLKTLNLKADSSGYLNGQLTGELQPLVEN
LPANVRITADGFKPGADLPDTLQLNQLELTGDGDLKNGYQLLGKATLPAEQGPVALLLQG
KVDAKGAQIAGLDLTANDKQSLKLTGQVDWSKGLSAEAKIDWLDFPWRRLYPLIDEPQVA
LRAFNGEVSYTDGNYIGNFKAALDGPAGAFSLNSPFSGNLTQIHLPQFKLEAGQGKAEGH
LNLQFADGIAWDTALDLSAINPAYWLAELPGTLAGPLRSKGEMKNETLSLTADLDLKGKL
RGQPAVLQAKADGAGEQWNLNTLQIRLGDNSINGKGSLQQKLAGQIDIKMPRLAQLWPQL
RGQLNGRVDVAGTLKAPQGELGLQGTQLAFEDNRLQSLNLDATLDSAQRAKIDLKGSGIQ
TGDTSLGTLTASGQGDIKNQKLALDLQGPKLKLALGLDGTLDKGNWRGRLASGVIQAGGQ
DWKLQNPAKLERLADGKINFGAHCWMSGPASLCGEDQRLMPEPKLRYHLKQFPIDSLAQW
LPKDFAWKGKLNADLQLDLPASGPNGQISIDASGGTLRMREKEQWLDFPYQTLKLTSKLT
PKRIDTDLNFVGGKLGELMVQAQINPLPKNKPLTGSFRLSGLDLSVARPFVPMVEKLTGH
LSGSGTLSGGLLAPLVNGNLELRDGEISGPELPMALEALQLQAVIAGETVQLNGGWKSGK
SGQGSLNGNIAWGQALVVDLALKGSQLPVTVEPYAALEVAPDLKISMKDDRLAIVGKVLV
PKGEITVRELPPSTVKVSDDTVIVGQQTEEGKPPMAMAMDIDVVVGQDKLSFAGFGLTAN
LQGQVHIGDNMDTRGELWLNDGRYRAYGQRLTVRRARLLFAGPIDQPYLDIEAIRQTDDV
IAGIRLSGSAEQPTTQIFSEPAMSQEQALSYLVLGRPLSTTGEDNNMLAQAALGLGLMGS
SGVTSGLAKDLGIQDFQLDTQGSGANTAVVASGNISEKLSLRYGVGVFEPANTIALRYKL
SKKVYLEAASGVASSLDIFYKRDF