Protein Info for Pf1N1B4_3965 in Pseudomonas fluorescens FW300-N1B4

Annotation: FIG033889: YebC paralog in Betaproteobacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 PF20772: TACO1_YebC_N" amino acids 8 to 71 (64 residues), 78.1 bits, see alignment E=6e-26 PF01709: Transcrip_reg" amino acids 78 to 229 (152 residues), 152.5 bits, see alignment E=8.1e-49

Best Hits

Swiss-Prot: 98% identical to Y3960_PSEF5: Probable transcriptional regulatory protein PFL_3960 (PFL_3960) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a1826)

Predicted SEED Role

"FIG033889: YebC paralog in Betaproteobacteria"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166PPE2 at UniProt or InterPro

Protein Sequence (234 amino acids)

>Pf1N1B4_3965 FIG033889: YebC paralog in Betaproteobacteria (Pseudomonas fluorescens FW300-N1B4)
MGAQWKVKHKEAAANAKGKIFGKLVKEITIAARNGADTTTNAHLRLVVEQAKKASMPRET
LERAIKKGSGQLGETVQYHRVTYEGFAPHQVPLIVECVTDNINRTVAEIRVAFRKGQLGA
SGSVAWDFNHVGMIEASPDSPDADPEMAAIEAGAQDFEPGEDGATLFLTEPADLDAVQKA
LPEQGFTVLSAKLGYQPKNPVSGLSDEQMAEVEAFLEGLDNHDDVQDMFVGLAG