Protein Info for Pf1N1B4_3935 in Pseudomonas fluorescens FW300-N1B4

Annotation: Major facilitator family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 41 to 63 (23 residues), see Phobius details amino acids 70 to 89 (20 residues), see Phobius details amino acids 95 to 117 (23 residues), see Phobius details amino acids 129 to 150 (22 residues), see Phobius details amino acids 157 to 178 (22 residues), see Phobius details amino acids 200 to 223 (24 residues), see Phobius details amino acids 235 to 253 (19 residues), see Phobius details amino acids 265 to 284 (20 residues), see Phobius details amino acids 290 to 310 (21 residues), see Phobius details amino acids 321 to 344 (24 residues), see Phobius details amino acids 354 to 376 (23 residues), see Phobius details PF07690: MFS_1" amino acids 9 to 320 (312 residues), 131.6 bits, see alignment E=1.6e-42

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfo:Pfl01_3708)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166PNI0 at UniProt or InterPro

Protein Sequence (384 amino acids)

>Pf1N1B4_3935 Major facilitator family transporter (Pseudomonas fluorescens FW300-N1B4)
MLLPILLLSAAGFTVLTTEFIIVGLLPAIARDLDVSIPQAGLLVTLFAFTVAAFGPFLTA
YFARFERRKLFISVLIMFGLANTLAALAPNIGVMAVARLIPALGLPVFWALASETAVDIV
GPDYAGRAIAKIGFGIVCATVFGIPVGTLISDAFGWRSAFGILAVIAFAKALLLFIYLPK
TNLHQHQVSFRSQFKILRSPLMLGHVLLSILVFSGMFTAYTYLADILERLAGFDGTVVGW
CLMGFGAVGLIGNSLGGRAVDRHPLIASVTFCAFMIAGMVALVPNIHSPLGLAAAMGIWG
VTQAALFLVSHVRLMKAAPEAPAFAASLNIAGANLGIGLGAMVGGRVIDSVGLGGLGFAA
AGFILVSILLAMALMTFKPREICA