Protein Info for Pf1N1B4_3924 in Pseudomonas fluorescens FW300-N1B4

Annotation: Lipoprotein releasing system transmembrane protein LolE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 transmembrane" amino acids 22 to 48 (27 residues), see Phobius details amino acids 271 to 295 (25 residues), see Phobius details amino acids 315 to 343 (29 residues), see Phobius details amino acids 380 to 400 (21 residues), see Phobius details TIGR02212: lipoprotein releasing system, transmembrane protein, LolC/E family" amino acids 4 to 413 (410 residues), 496 bits, see alignment E=4.3e-153 PF12704: MacB_PCD" amino acids 27 to 241 (215 residues), 72.9 bits, see alignment E=4.6e-24 PF02687: FtsX" amino acids 274 to 407 (134 residues), 64.9 bits, see alignment E=7e-22

Best Hits

KEGG orthology group: K09808, lipoprotein-releasing system permease protein (inferred from 96% identity to pba:PSEBR_a1768)

Predicted SEED Role

"Lipoprotein releasing system transmembrane protein LolE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166PN76 at UniProt or InterPro

Protein Sequence (414 amino acids)

>Pf1N1B4_3924 Lipoprotein releasing system transmembrane protein LolE (Pseudomonas fluorescens FW300-N1B4)
MFRPLSIFIGARYTRAKRRNRFVSFISMTSMIGLALGVLAMIVVLSVMNGFQREMSSRIL
GMVPHATIVGVNPIDDWQPVAAAAMKNPEVTAAVPFTEMEGMLSYKGTMQPIQVSGVDPA
LEGKVSIVAKHIVQGRLDALKPGEFGVVIGEITARRFRLSVGDKITLIVPEISTAPGGIT
PRMQRLNVVGVFKVGAELDGSMALIHLADAAQMQHWQPNQVQSVRLAVKDLYAAPQVSSD
IATGLGAAYKADDWTHTQGSLFSAMKMEKTMIGLLLLMIVAVAAFNIIATLIMVVNDKGA
DIAILRTIGATPRQIMAIFMVQGTVIGVVGTLIGGVLGVIAALNVSELVGWMERVSGQHI
FSSDVYFVSNLPSELQGADVLLICSAGFIMSFLATVYPAWRAAKVEPATALRYS