Protein Info for Pf1N1B4_3914 in Pseudomonas fluorescens FW300-N1B4

Annotation: COG0553: Superfamily II DNA/RNA helicases, SNF2 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 896 PF04434: SWIM" amino acids 74 to 95 (22 residues), 19.9 bits, see alignment (E = 1.1e-07) PF04851: ResIII" amino acids 425 to 580 (156 residues), 28.7 bits, see alignment E=2.9e-10 PF00176: SNF2-rel_dom" amino acids 429 to 708 (280 residues), 248.3 bits, see alignment E=2.2e-77 PF00270: DEAD" amino acids 452 to 581 (130 residues), 31.5 bits, see alignment E=3.5e-11 PF00271: Helicase_C" amino acids 725 to 833 (109 residues), 79.1 bits, see alignment E=7.4e-26

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfo:Pfl01_3868)

Predicted SEED Role

"COG0553: Superfamily II DNA/RNA helicases, SNF2 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166PMY2 at UniProt or InterPro

Protein Sequence (896 amino acids)

>Pf1N1B4_3914 COG0553: Superfamily II DNA/RNA helicases, SNF2 family (Pseudomonas fluorescens FW300-N1B4)
VPPTLSKPLATSWVSRFKEQSLERGRRYALENRVRIVEVGDATITASCEGSGGNVYRQTI
RLRESAKGTLLMIDATCTCPVHSNCKHCAAVLLQVQETLAYPAAAKDAELLEKLQAVLEN
RSPKAPPQVLVDNVQPVPRLWLASIEFSAFEPRNGKMQRYIQHRAALSFSYLDEYVSGQK
NTDILIRQETQTLRIKRHPEVEQAYREQLRILGFKIATRQSKALPESAGELYEMVNDSAW
LTFTLNELPKLRTQGWELQIDEDFGFDLTAVEDWYATVEQAPERDWFDLELGIIVNGERL
SLLPILLNLMRSHTELLNPERLARRRDDELILVNIPQRRSTDQGPLQVALPFGRLKPVLA
TLGEFYLQEPGETTLRLSKADATRLNPLEGLPLLWEGGEQIRTFAQRLRDIKDHTAVAPE
GLNATLRPYQLEGLSWMRSLRQLEVGGILADDMGLGKTLQTLAHILSEKNAGRLDRPCMV
VMPTSLIPNWLDEAAHFTPQLKVLALYGASRKKHFGDLADYDLILTTYALLPKDVERLAA
QPLHVLVLDEAQYIKNPNSKAAHAARELNARQRLCLSGTPLENHLGELWSLFHFLLPGWL
GDVKSFNRDYRVPIEKRASDVRLQHLNGRIKPFLLRRTKEQVATELPPKTEIIHWVELNE
AQRDVYETMRLAMDKKVRDEITRKGVARSQIIILEALLKLRQVCCDLRLVNDAALPSRGS
TSGKLDSLMEMLEELFEEGRRILLFSQFTSMLSLIEDELKKRGVAYVILTGQTRDRRTPV
KEFQSGKRQIFLISLKAGGVGLNLTEADTVIHYDPWWNPATENQATDRAYRIGQEKPVFV
YKMIARGTVEEKIQHLQKEKSDLAAGVLDGRKTGDWKLQSDDIEALFAPLPEKIDK