Protein Info for Pf1N1B4_3900 in Pseudomonas fluorescens FW300-N1B4

Annotation: Universal stress protein family COG0589

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 145 PF00582: Usp" amino acids 3 to 141 (139 residues), 116.3 bits, see alignment E=8.1e-38

Best Hits

KEGG orthology group: K06149, universal stress protein A (inferred from 94% identity to pfl:PFL_1938)

Predicted SEED Role

"Universal stress protein family COG0589" in subsystem Universal stress protein family

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166PMM8 at UniProt or InterPro

Protein Sequence (145 amino acids)

>Pf1N1B4_3900 Universal stress protein family COG0589 (Pseudomonas fluorescens FW300-N1B4)
MPYNHILVAVDLTEECDPVIHRARELSVSNGAKLSLVHIVEPMAMAFGGDVPMDLSQLQQ
QQFDQAKERLERLIVKYPELSKEYSHLTYGQPRQEIHHLAKEQTCDLIVVGSHGRHGLAL
LLGSTANDVLHGAPCDVLAVRLIKS