Protein Info for Pf1N1B4_3863 in Pseudomonas fluorescens FW300-N1B4

Annotation: FIG000557: hypothetical protein co-occurring with RecR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 112 TIGR00103: DNA-binding protein, YbaB/EbfC family" amino acids 3 to 108 (106 residues), 108.7 bits, see alignment E=7.4e-36 PF02575: YbaB_DNA_bd" amino acids 10 to 102 (93 residues), 112.9 bits, see alignment E=3.2e-37

Best Hits

Swiss-Prot: 90% identical to Y1905_PSEF5: Nucleoid-associated protein PFL_1905 (PFL_1905) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)

KEGG orthology group: K09747, hypothetical protein (inferred from 95% identity to pba:PSEBR_a1713)

Predicted SEED Role

"FIG000557: hypothetical protein co-occurring with RecR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166PM31 at UniProt or InterPro

Protein Sequence (112 amino acids)

>Pf1N1B4_3863 FIG000557: hypothetical protein co-occurring with RecR (Pseudomonas fluorescens FW300-N1B4)
MMKGGMAGLMKQAQQMQEKMAKMQEELANAEVTGKAGGDMVTVVMTGRHDVKRVTIDPSL
VEGLSEDDKEMLEAVFAAAVNDAVRKIEANSQDKMSGVTAGMQLPPGMKLPF