Protein Info for Pf1N1B4_3855 in Pseudomonas fluorescens FW300-N1B4

Annotation: Chromosome partition protein smc

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1162 TIGR02168: chromosome segregation protein SMC" amino acids 2 to 1153 (1152 residues), 1196.9 bits, see alignment E=0 PF13175: AAA_15" amino acids 3 to 312 (310 residues), 32.5 bits, see alignment E=1.9e-11 PF02463: SMC_N" amino acids 3 to 1146 (1144 residues), 225.8 bits, see alignment E=1.1e-70 PF13476: AAA_23" amino acids 6 to 230 (225 residues), 47.4 bits, see alignment E=9.5e-16 PF13304: AAA_21" amino acids 27 to 217 (191 residues), 29.9 bits, see alignment E=1.4e-10 PF06470: SMC_hinge" amino acids 523 to 614 (92 residues), 36.1 bits, see alignment E=2e-12

Best Hits

KEGG orthology group: K03529, chromosome segregation protein (inferred from 94% identity to pba:PSEBR_a1705)

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162AY70 at UniProt or InterPro

Protein Sequence (1162 amino acids)

>Pf1N1B4_3855 Chromosome partition protein smc (Pseudomonas fluorescens FW300-N1B4)
VRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES
MTDVIFNGSTSRKPVSQASIELVFDNSDGTLLGEWAAYAEISIRRKVTRDSQTTYYLNGA
KCRRRDITDIFLGTGLGPRSYSIIEQGMISKLIESKPEDLRNFIEEAAGISKYKERRRET
ENRIRRTHENLARLTDLREELERQLERLHRQAEAAKKYQEYKGEERQLKAQLSALRWQAL
NEQVGQRESIIGTQEITFEALVAEQRNADAAIERLRDGHHDLSERFNLVQGRFYSVGGDI
ARVEQSIQHGQQRLRQLQDDLKEAERARLETESHLGHDRTLLLTLGEELDMLTPEQEVTS
AAAEEAAAALEESETTMHGWQEQWDTFNLTAAEPRRQAEVQQSRIQQLETSLERLADRQK
RLGEERALLSADPEDAAIMELSEQLAASEATLEDLQASEEAQVERLEQLRQELQQALSAQ
QQAQGDLQRLNGRLASLEALQQAALDPGTGTAEWLREQHLADRPRLAEGLKVEAGWELAV
ETVLGADLQAVLVDDFGDFDLAGFAQGDLRLLSPATDGVRMPGSLLDKVEAQIDLSPWLG
QVKPVDSLEQALALRGQLAAGQSLISRDGYWVGRHFLRVRRASEAESGVLARGQEIQRLG
LEREEREATVETLETRLQNLRAQQRQQENGREHLRRLLQDEARQQGELKAQLSAGKAKVE
QLTLRRTRLDEELTELSEQRALEHENIGEARLQLQEALDSMALDTEQRELLLAQRDSLRE
RLDRVRQEARQHKDHAHQLAVRLGSLKAQHDSTRQALERLEMQSERLTEKREQLSLNLEE
GEAPLEELRLKLEELLDKRMTVDEELKTAQMAMEDADRELRDAEKRRTQAEQQSQLIRSQ
LEQQRMEWQALTVRRKTLQDQLLEDGYDLNGVLATLLAGANEKDAEEELERIAARIQRLG
AINLAAIDEYQQQSERKRYLDAQNDDLVEALDTLENVIRKIDKETRNRFKDTFDQINGGL
QALFPKVFGGGRAYLELTGEDLLDTGVTIMAQPPGKKNSTIHLLSGGEKALTALALVFAI
FKLNPAPFCMLDEVDAPLDDANVGRYARLVKEMSQTVQFIYITHNKIAMEMADQLMGVTM
HEPGCSRLVAVDVEEAMAMVDA