Protein Info for Pf1N1B4_3849 in Pseudomonas fluorescens FW300-N1B4

Annotation: Transcriptional regulator, GntR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 PF00392: GntR" amino acids 27 to 85 (59 residues), 63.7 bits, see alignment E=1.5e-21 PF07729: FCD" amino acids 95 to 217 (123 residues), 84.2 bits, see alignment E=1.6e-27

Best Hits

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a1699)

Predicted SEED Role

"Transcriptional regulator, GntR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166PLM2 at UniProt or InterPro

Protein Sequence (254 amino acids)

>Pf1N1B4_3849 Transcriptional regulator, GntR family (Pseudomonas fluorescens FW300-N1B4)
MNEQLQPLKKQPRAGKAGRSGTQDDIVYAHIFEAILEQRLAPGTKLSEEALGEIFGVSRT
IIRRALSRLAHEGVVLLRPNRGAVVASPSVDEARQVFMARRLVERAITELAVQHATAEEI
ADLRQMVNDERDSFSRGDRGAGIRLSGEFHLKLAEAAKNTPLISFQRSLVSQTSLIIAQY
ESGNRSHCSYDEHTQLINAIEARDATLAVDLMMHHMDHIDSKLNLDEESASDDLHAVFSH
LLQTKKPGRSTAKL