Protein Info for Pf1N1B4_3845 in Pseudomonas fluorescens FW300-N1B4

Annotation: CHASE domain/PAS domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 796 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 313 to 335 (23 residues), see Phobius details PF03924: CHASE" amino acids 88 to 271 (184 residues), 123.2 bits, see alignment E=3.5e-39 PF00989: PAS" amino acids 366 to 492 (127 residues), 34.1 bits, see alignment E=7.3e-12 TIGR00229: PAS domain S-box protein" amino acids 374 to 502 (129 residues), 41.7 bits, see alignment E=1.2e-14 PF08448: PAS_4" amino acids 374 to 497 (124 residues), 24 bits, see alignment E=1.2e-08 PF13426: PAS_9" amino acids 377 to 494 (118 residues), 31.1 bits, see alignment E=7e-11 PF08447: PAS_3" amino acids 533 to 607 (75 residues), 39.4 bits, see alignment E=1.8e-13 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 634 to 792 (159 residues), 152.1 bits, see alignment E=1.2e-48 PF00990: GGDEF" amino acids 638 to 790 (153 residues), 143.2 bits, see alignment E=2e-45

Best Hits

KEGG orthology group: None (inferred from 84% identity to pfo:Pfl01_1789)

Predicted SEED Role

"CHASE domain/PAS domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161Z6E7 at UniProt or InterPro

Protein Sequence (796 amino acids)

>Pf1N1B4_3845 CHASE domain/PAS domain protein (Pseudomonas fluorescens FW300-N1B4)
MSLHAVRPKILGFIREDVSAWLVALLALLVGGVLTGLLAWATFNQFHQQLRQRFQLLTSE
RYSRIEERFEDQEQRLDGLRRFFVNSESVSREEFDGYAKPLLRRTQAYSWAPRVSRTERP
LLERAVSAEGLSDFTFRELNADGQLQSAGLRDEYVPVLYTQTQSRMPTPLGYDLLAQPLR
RSTLERADRNGRMAVSQPLHLVGIEPAYSRGVLLVAPVIHQNILNAAPAGYVMAVISMRQ
LLADGLPEGNQDSLSVRILDLSTADQHEVLYESTNTAGASGLSSTRLLRLADHDYQVDMR
PSAAFLKANHSSVASLVVLGGLLSLLLSVFLYVLVSQRQRALKMVELRTQELHDREQELR
GTHGQLRGVLDAATQVAIIATDLRGVISTFNAGAEQMLGYTSAQVVGHMTLESLHLPREL
EARSAELSARYGKPIPTCQAMLVEGGEEGGHEAREWTLVRHDASHLTVNMLATPVLDEHG
LWVGHLAICIDITERKRVHEALAARDLLLKKLSAHVPGGIYQFKMEFDGRFSVIYASDGM
RDIYELEPEVLLLNAEAVFARIHPQDTRRVRASILASADTLSPWREEYRVQLPERGLRWV
RGEATPEELPGGGVLWHGYISDISDLKRVEEELRALSVTDSLTGIHNRRYFQERLTTEMA
RVERGGGELSVIMLDIDHFKRINDQHGHAVGDRVLQAVCERIGGRLRRTDVFCRLGGEEF
MVLCPDIDGEQALVLAVELWQGLRSAPIDEVGIVTASFGIASWRAGEGADALLLRADSGV
YAAKQAGRDRVEGQMS