Protein Info for Pf1N1B4_3807 in Pseudomonas fluorescens FW300-N1B4

Annotation: Rhs family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1625 PF20148: DUF6531" amino acids 448 to 521 (74 residues), 76.9 bits, see alignment 3.1e-25 TIGR01643: YD repeat (two copies)" amino acids 638 to 667 (30 residues), 18.6 bits, see alignment (E = 2.1e-07) amino acids 746 to 775 (30 residues), 24.5 bits, see alignment (E = 2.8e-09) amino acids 800 to 827 (28 residues), 18.3 bits, see alignment (E = 2.6e-07) amino acids 808 to 843 (36 residues), 29.3 bits, see alignment (E = 8.6e-11) amino acids 828 to 868 (41 residues), 26.5 bits, see alignment (E = 6.5e-10) amino acids 849 to 889 (41 residues), 23.7 bits, see alignment (E = 4.9e-09) amino acids 870 to 905 (36 residues), 21.3 bits, see alignment (E = 2.9e-08) amino acids 891 to 932 (42 residues), 31.9 bits, see alignment (E = 1.3e-11) amino acids 1044 to 1083 (40 residues), 26 bits, see alignment (E = 9.3e-10) amino acids 1269 to 1303 (35 residues), 23.9 bits, see alignment (E = 4.3e-09) PF05593: RHS_repeat" amino acids 746 to 777 (32 residues), 35.5 bits, see alignment (E = 2.6e-12) amino acids 808 to 842 (35 residues), 37.6 bits, see alignment (E = 5.8e-13) amino acids 849 to 884 (36 residues), 33.8 bits, see alignment (E = 8.9e-12) amino acids 912 to 949 (38 residues), 29.1 bits, see alignment (E = 2.6e-10) amino acids 1024 to 1055 (32 residues), 29.3 bits, see alignment (E = 2.3e-10) amino acids 1269 to 1302 (34 residues), 26.2 bits, see alignment (E = 2.2e-09) PF03527: RHS" amino acids 1351 to 1385 (35 residues), 55 bits, see alignment (E = 1.4e-18) TIGR03696: RHS repeat-associated core domain" amino acids 1377 to 1456 (80 residues), 90.3 bits, see alignment 8.7e-30 PF02917: Pertussis_S1" amino acids 1497 to 1555 (59 residues), 25.7 bits, see alignment (E = 2.5e-09) PF22596: Scabin-like" amino acids 1498 to 1618 (121 residues), 44.3 bits, see alignment 4.3e-15

Best Hits

KEGG orthology group: None (inferred from 74% identity to pfo:Pfl01_1751)

Predicted SEED Role

"Rhs family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161ZB21 at UniProt or InterPro

Protein Sequence (1625 amino acids)

>Pf1N1B4_3807 Rhs family protein (Pseudomonas fluorescens FW300-N1B4)
MFEPDKVLALNNAIGLLVVAAMNPEQPDIEALLGDFRLCLNDYEAWAENFWTGGALDVEQ
VFKVGNEVRLSAPKDSTTPVSSTLAMCPASGPLTLVHMFEAARFVPIGDTPVMLEPVISQ
RNGELTFGEPVHETIGPSGILEIPDCWRGQRYRITFFPNVSADHVKALYASYQGVIGELE
DWLRNEWSSEFEPLWAGFSEATFTQRYGLLQQADWRGFERSLQGLWDDVKQVYALLADLQ
TNSEKLLEYLTQGELETLLNASAEAIANVLLMLSDEPLMFIHLAAFTSWLRMLPPQYIAE
VVAQIRTELLISFLLVRLTGPTGLKLGMSAKVLDKIKSRQARQWLAAASLRLAELTAKSD
LTAHAGALKPLVVSARNASLKPAPTVPLQISAGDSPVVQVNNPVAIARDKSAAMTRLGRH
EPHDDEPSQAKNPNGDSSDCAALTCTNGCPVSMVTGEELLTLTDGSLDGLLPFAFTRLYR
TSAAEVDCGLGWGWSHSLAQRLELDDEQVVWIDHENRRTTFPLPSVERPAIHNSLSRAAI
YLGNESQELILALAGETSRFYHFREGRLTAISDAYNNRLHITRDRQDRIQRLDNGAGRSL
LLRYERRHLVAIEYQSFHPADAVVEAWHTEQMLVFYRYDASQRLIEATNAAGESERYDYD
DQHVILQRQLAGGASFFWEWEKSGKAARCVRHWASFSQMDTRYVWDDQGSVTVQNIDGSE
EVYVHDDRARLVRRVELDGGEHLKAYDDNGRLVAEQDPLGAVTEYRYDDVGRLVTLVPPQ
DEPTSYEYRNGFLHACYRGQAAWKYQRNAQGDVTEATDPDGQVTHYQHDAQGRLLSIRFP
DNSRHVFIWNGLGQLLEETLPDGSQRRFSYDALGRQTTRQDEHGALTQYQWDAVGRLVQA
TLPTGASRAFSYNAYGKITAERDELGRVTRYEYADDLHLVSRRINPDGTQLRYRYDNAQR
LLTEIENEAGEHYRLDYTPGGLIRQETGFDGRRTAYSYDLNGHLLEKTEFGDDDSQLITG
YQRDSAGRLLVKTLPDGVKVKYRYDRLGRLVSVDDGHDHPLEFEYDAQDRLITEHQSWGT
LRYRYDACGRLNHLRLPDNSKLDYHHAKGGALTAIDLNGTRLTRHQFAFGREQQRQQGQL
TSEYSYDDQGRLKAHAVSQQQQALYRRDYAYSANGNLDHIADTRHGQRSYQYDSLDRLIR
VRHSRDQLPESFAHDPASNLLMQDRPGPATVKGNRLLMLGDCHFDYDAFGNLIRERRGTA
QKLVTEYRYDGQHRLIGVMLTDSRCVSYRYDAFGRRISKTVEGKTTEFFWQGDHLVAEHS
QDHHRSYIYEPGSFRPLAMLDGKGPRQACPFYYQLDHLGTPQELTDYSGDIIWAARYTAY
GRLTRLNRDTHQVLDQPLRFQGQYFDAETGLHYNRHRYYNPDVGRYLTPDPSKLAGGLNG
YQYTRNPTGWVDPLGLSECPGGDGCKKPSFGDENPAGKVGVDEGEPTTPSPKKEEDYLYR
GDEREPNDVFQNGFKSKGKSNDLLLHSIDSENPPSNFISTSPSRDVGKLFATGYHTKVGY
LYTLQKIDGYDLQKELGQAYLFGAEKEIAIANRIENSDVLGATLIIDDGRELGYSIPNPY
RIIKK