Protein Info for Pf1N1B4_3802 in Pseudomonas fluorescens FW300-N1B4

Annotation: PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 106 PF01906: YbjQ_1" amino acids 1 to 105 (105 residues), 111 bits, see alignment E=2e-36

Best Hits

Swiss-Prot: 92% identical to Y1745_PSEPF: UPF0145 protein Pfl01_1745 (Pfl01_1745) from Pseudomonas fluorescens (strain Pf0-1)

KEGG orthology group: None (inferred from 92% identity to pfo:Pfl01_1745)

Predicted SEED Role

"PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162AY24 at UniProt or InterPro

Protein Sequence (106 amino acids)

>Pf1N1B4_3802 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene (Pseudomonas fluorescens FW300-N1B4)
MITTTTHTIEGRQITAYLDIVSAESVQGVNVIRDLFAGMRDFFGGRSQTLERALKDARIQ
ATDEIKERARALQADAVVGLDYEISMPAGKGGMVVVFVTGTAVKLR