Protein Info for Pf1N1B4_3746 in Pseudomonas fluorescens FW300-N1B4

Annotation: ABC transporter permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 281 transmembrane" amino acids 10 to 35 (26 residues), see Phobius details amino acids 69 to 88 (20 residues), see Phobius details amino acids 109 to 130 (22 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details amino acids 198 to 222 (25 residues), see Phobius details amino acids 250 to 273 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 75 to 275 (201 residues), 50.4 bits, see alignment E=1.1e-17

Best Hits

KEGG orthology group: K02054, putative spermidine/putrescine transport system permease protein (inferred from 94% identity to pfl:PFL_4389)

Predicted SEED Role

"ABC transporter permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166PJ15 at UniProt or InterPro

Protein Sequence (281 amino acids)

>Pf1N1B4_3746 ABC transporter permease protein (Pseudomonas fluorescens FW300-N1B4)
VNAMTRGKWLAALCLVPFAIFFFVFQIAPLLWVMINSLESEEFGWGLANFSKIFNSKFYL
QAIQYSLEISFWSSVFGIIIAVLGAYSLRRVDSKLRNFVNAFANMTSNFAGVPLAFAFII
LLGFNGSITIMLKQAGIIQDFNLYSKTGLIILYTYFQIPLGVLLLYPAFDALREDWRESA
ALLGANGWQFWRHIGLPVLTPALLGTFVILLANALGAYATVYALTTGNFNVLPIRIAAMV
SGDISLDPNLASALAVVLVALMTLVTIVHQLLLKRSYHVSR