Protein Info for Pf1N1B4_3704 in Pseudomonas fluorescens FW300-N1B4

Annotation: L-sorbosone dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF23500: DUF7133" amino acids 125 to 361 (237 residues), 34.9 bits, see alignment E=1.7e-12 PF07995: GSDH" amino acids 172 to 362 (191 residues), 47.5 bits, see alignment E=2.4e-16

Best Hits

Swiss-Prot: 64% identical to SNDH_GLULI: L-sorbosone dehydrogenase from Gluconacetobacter liquefaciens

KEGG orthology group: None (inferred from 90% identity to pfo:Pfl01_1639)

Predicted SEED Role

"L-sorbosone dehydrogenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166PHW4 at UniProt or InterPro

Protein Sequence (437 amino acids)

>Pf1N1B4_3704 L-sorbosone dehydrogenase (Pseudomonas fluorescens FW300-N1B4)
MRNPQLVFIIALAGGLAACGETSSLQVSDGTGPSPKLPEPNKTLIPTVNIAPAIGWPEGK
KPVAATGTQVAAFAEGLDHPRWLYVLPNGDVLVAETNAPPKPDDGQGIRGWVMGKVMGRA
GAGVPSPNRITLLRDKDHDGVAETRTVFLENLNSPFGMTLVGNDLYVADTDRLLRFHYEN
GETAIKSQPIKVVDLPGGTLNHHWTKNVIASKDGSKLYVTVGSNSNVGENGMDQEEGRAA
IWEVDRATGNHRIFASGIRNPNGLAWEPQSGALWTAVNERDEIGSDLVPDYITSVKDGGF
YGWPYSYYGQHVDIRVEPQNPDLVAKAIAPDYAVGPHTASLGLTFAEGSKLPAPFTQGAF
IGQHGSWNRKPHSGYKVIFVPFTAGKPTGQPVDVLTGFLTDDEKAMGRPVGVVIDQQGGL
LVADDVGNKVWRVSAAK