Protein Info for Pf1N1B4_3622 in Pseudomonas fluorescens FW300-N1B4

Annotation: Flagellar biosynthesis protein FlhA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 709 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 46 to 66 (21 residues), see Phobius details amino acids 71 to 91 (21 residues), see Phobius details amino acids 121 to 141 (21 residues), see Phobius details amino acids 209 to 229 (21 residues), see Phobius details amino acids 241 to 267 (27 residues), see Phobius details amino acids 287 to 305 (19 residues), see Phobius details amino acids 311 to 328 (18 residues), see Phobius details TIGR01398: flagellar biosynthesis protein FlhA" amino acids 21 to 705 (685 residues), 847.7 bits, see alignment E=3.1e-259 PF00771: FHIPEP" amino acids 31 to 697 (667 residues), 870.6 bits, see alignment E=4.2e-266

Best Hits

Swiss-Prot: 45% identical to FLHA_AQUAE: Flagellar biosynthesis protein FlhA (flhA) from Aquifex aeolicus (strain VF5)

KEGG orthology group: K02400, flagellar biosynthesis protein FlhA (inferred from 97% identity to pba:PSEBR_a1495)

Predicted SEED Role

"Flagellar biosynthesis protein FlhA" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161ZAM9 at UniProt or InterPro

Protein Sequence (709 amino acids)

>Pf1N1B4_3622 Flagellar biosynthesis protein FlhA (Pseudomonas fluorescens FW300-N1B4)
VDRSQLINTARTNVADLSRGNLGVPLLLLVMLAMMMLPVPPFLLDVFFTFNIALSIVVLL
VCVYALRPLDFAVFPTILLVATLLRLALNVASTRVVMLHGQDGHAAAGKVIQAFGEVVIG
GNYVVGIVVFAILMIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQNQ
AKLRRMEVAQEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGMAVGIFQHGMTFGDAGR
VYALLTIGDGLVAQLPSLLLSTAAAIMVTRASGSEDMGKQINRQMFASPKALAVAAGLMA
VMGLVPGMPHFSFLSMAALAAGGAYLFWKKQNTVKVQALQEVKRQQELLPSPARAQETKE
LGWDDVTPIDMIGLEVGYRLIPLVDRNQGGQLLARIKGVRKKLSQDLGFLMPTVHIRDNL
DLAPSAYRLTLMGVILAEAEIYPDRELAINPGQVYGTLNGITAKDPAFGLEAVWIEISQR
AQAQSLGYTVVDASTVVATHLNQILYKHSSELIGHEEVQQLMQLLAKSSPKLAEELVPGV
VSLSQLLKVLQALLAEQVPVRDIRSIAEAIANNAAKSQDTAALVAAVRVGVSRAIVQSIV
GTESQLPVITLEPRLEQILLNSLQKAGQGSEEGVLLEPSMAEKLQRSLIEAAQRQEMQGQ
PVILLVAGPVRAMLSRFGRLAVPGLHVLAYQEIPDNKQVTIVATVGPNG