Protein Info for Pf1N1B4_3608 in Pseudomonas fluorescens FW300-N1B4

Annotation: Flagellar protein FliJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 149 TIGR02473: flagellar export protein FliJ" amino acids 7 to 144 (138 residues), 122.5 bits, see alignment E=8.7e-40 PF02050: FliJ" amino acids 23 to 143 (121 residues), 115.8 bits, see alignment E=7.2e-38

Best Hits

KEGG orthology group: K02413, flagellar FliJ protein (inferred from 88% identity to pba:PSEBR_a1482)

Predicted SEED Role

"Flagellar protein FliJ" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166PEZ5 at UniProt or InterPro

Protein Sequence (149 amino acids)

>Pf1N1B4_3608 Flagellar protein FliJ (Pseudomonas fluorescens FW300-N1B4)
MASSRAARLAPVVEMAEKAEKTAVLRLGHFQGQVRLAESKLADLENFRLEYQEQWIVRGS
SGVSGQWLLGYQGFLAQLGTAIDQQRQSLNWHQNNLNKSREAWQQAFARVEGLRKLVQRY
RDEARQLEDKREQKLLDELSQRLPRQDPY