Protein Info for Pf1N1B4_3496 in Pseudomonas fluorescens FW300-N1B4

Annotation: Cytochrome c-type biogenesis protein ResA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 133 PF08534: Redoxin" amino acids 11 to 119 (109 residues), 45.4 bits, see alignment E=1.5e-15 PF00578: AhpC-TSA" amino acids 12 to 118 (107 residues), 72.6 bits, see alignment E=5.9e-24 PF13905: Thioredoxin_8" amino acids 26 to 116 (91 residues), 33.7 bits, see alignment E=7.7e-12

Best Hits

KEGG orthology group: None (inferred from 91% identity to pfo:Pfl01_4227)

Predicted SEED Role

"Cytochrome c-type biogenesis protein ResA" in subsystem Biogenesis of c-type cytochromes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (133 amino acids)

>Pf1N1B4_3496 Cytochrome c-type biogenesis protein ResA (Pseudomonas fluorescens FW300-N1B4)
LLGGCGNDYGVDQNGHKVAAERLDKQWLVLNYWAEWCGPCRTEIPELNVLAEQLKGKKIG
VFGVNFDNVQGEDLKSASEKLGIAFTVLAQDPADLFELPRSEALPVTYIIDDKGKVREQL
MGEQTAAGGDGEA