Protein Info for Pf1N1B4_3469 in Pseudomonas fluorescens FW300-N1B4

Annotation: Flagellar basal-body P-ring formation protein FlgA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details PF17656: ChapFlgA_N" amino acids 32 to 104 (73 residues), 74.8 bits, see alignment E=8.8e-25 TIGR03170: flagella basal body P-ring formation protein FlgA" amino acids 95 to 230 (136 residues), 137.3 bits, see alignment E=1.6e-44 PF13144: ChapFlgA" amino acids 108 to 230 (123 residues), 126.1 bits, see alignment E=1.3e-40 PF08666: SAF" amino acids 108 to 169 (62 residues), 37.4 bits, see alignment E=4.7e-13

Best Hits

KEGG orthology group: K02386, flagella basal body P-ring formation protein FlgA (inferred from 92% identity to pfo:Pfl01_4254)

Predicted SEED Role

"Flagellar basal-body P-ring formation protein FlgA" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162AXB3 at UniProt or InterPro

Protein Sequence (232 amino acids)

>Pf1N1B4_3469 Flagellar basal-body P-ring formation protein FlgA (Pseudomonas fluorescens FW300-N1B4)
MSAVCLFNAGSPALADAVTLPDMLIGVTQGFLEFTVEDYLATSQTQGRYEIEVNQLDPRL
RMPMCDKELTATLESPARPLGRVTVKVRCDGASPWTVFVPAQVRLFRDIVTTTRPLKRTG
IIEPQDVTLRERDISLINQGFLTSVDQAIGQKLTRPMVADQVITLVHLEQAEVIRKGDQV
VITARSGTLSVRMPGEALSNGGMSEQIRVKNLNSQRVIKAQVTAPGQVEVSM