Protein Info for Pf1N1B4_3459 in Pseudomonas fluorescens FW300-N1B4

Annotation: T1SS secreted agglutinin RTX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2447 TIGR01965: VCBS repeat" amino acids 196 to 309 (114 residues), 44.4 bits, see alignment 1.5e-15 amino acids 315 to 414 (100 residues), 44.3 bits, see alignment (E = 1.6e-15) amino acids 472 to 549 (78 residues), 25.7 bits, see alignment (E = 1e-09) amino acids 554 to 663 (110 residues), 68.4 bits, see alignment 4.9e-23 amino acids 668 to 777 (110 residues), 62.5 bits, see alignment 3.3e-21 amino acids 782 to 891 (110 residues), 61.3 bits, see alignment 8.3e-21 amino acids 896 to 1005 (110 residues), 67.1 bits, see alignment 1.3e-22 amino acids 1010 to 1119 (110 residues), 62.5 bits, see alignment 3.3e-21 amino acids 1124 to 1228 (105 residues), 66.3 bits, see alignment (E = 2.3e-22) amino acids 1235 to 1326 (92 residues), 70.7 bits, see alignment (E = 9.5e-24) amino acids 1333 to 1423 (91 residues), 67.5 bits, see alignment (E = 9.1e-23) amino acids 1432 to 1514 (83 residues), 71.7 bits, see alignment (E = 4.6e-24) PF17963: Big_9" amino acids 518 to 628 (111 residues), 39.6 bits, see alignment 2.1e-13 amino acids 632 to 742 (111 residues), 43.1 bits, see alignment 1.8e-14 amino acids 746 to 856 (111 residues), 42.6 bits, see alignment 2.4e-14 amino acids 860 to 970 (111 residues), 41.5 bits, see alignment 5.5e-14 amino acids 974 to 1084 (111 residues), 42.7 bits, see alignment 2.2e-14 amino acids 1088 to 1198 (111 residues), 41.8 bits, see alignment 4.3e-14 amino acids 1202 to 1299 (98 residues), 34.2 bits, see alignment (E = 1e-11) amino acids 1302 to 1397 (96 residues), 31.9 bits, see alignment (E = 5.4e-11) amino acids 1400 to 1495 (96 residues), 37.1 bits, see alignment (E = 1.3e-12) PF17803: Cadherin_4" amino acids 519 to 593 (75 residues), 44.5 bits, see alignment (E = 5.6e-15) amino acids 633 to 707 (75 residues), 51.7 bits, see alignment (E = 3.1e-17) amino acids 749 to 821 (73 residues), 50.1 bits, see alignment (E = 9.7e-17) amino acids 863 to 935 (73 residues), 47.6 bits, see alignment (E = 5.9e-16) amino acids 975 to 1049 (75 residues), 49.2 bits, see alignment (E = 1.9e-16) amino acids 1091 to 1163 (73 residues), 50.1 bits, see alignment (E = 9.7e-17) amino acids 1205 to 1272 (68 residues), 39.8 bits, see alignment (E = 1.6e-13) amino acids 1302 to 1370 (69 residues), 36.4 bits, see alignment (E = 1.9e-12) amino acids 1400 to 1468 (69 residues), 36.4 bits, see alignment (E = 1.8e-12) PF00353: HemolysinCabind" amino acids 2315 to 2348 (34 residues), 30.3 bits, see alignment (E = 9.8e-11) TIGR03661: type I secretion C-terminal target domain (VC_A0849 subclass)" amino acids 2359 to 2430 (72 residues), 35.5 bits, see alignment (E = 1.9e-12)

Best Hits

Predicted SEED Role

"T1SS secreted agglutinin RTX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2447 amino acids)

>Pf1N1B4_3459 T1SS secreted agglutinin RTX (Pseudomonas fluorescens FW300-N1B4)
MATTTTTSGGTVTSLSNTPQAQDDIFTAGVIGTSTAAITEELLGVVYLDVMSNDLGGSAK
TLWSLDDATSLSTATKVYAPADLLVQDTGRIEATSTDTSFNGAKIWITSDGKVGYDAATL
STAFKAQLQALAAGGSLTDSFTYAIRLGNGTLSWATAQVQFAGMNDSVTMSLGAQASTVT
EDASTTPSTTDSLSATGTIAFSDVDLSDTHTASFEAAGGNTTALGTFVLAPVTEAANTAD
GSVNWTYTLNNAAAQSLAQGQTATETYVVTINDGHGSSTTQNVTITITGTNDQVQITSGA
QTGDAGEDSGDYAASGNITFTDVDLIDTHSVTVTPGASGYLGSFTTDPLSDSTGTGSGSL
GWNFAVNNTALQFLGEGQIVTQTYNVAIGDGAVQTVTITITGTNDRPTLTIADSSGAMNE
GNGTATLSDSGALSFADVDNIDVVTVSHTSDGNIAWSGGTLNAGVASALVAGFSVDQNSW
DYSSNQNLDFLGAGETITFSYTVVATDNSGAANAASATQTVTITLTGTNDAPVLSFATGN
DVGAVQEDSTLSVSGQFSSADIDHAATATWSINGSASGTYGSIAVNSTGQWTYTLANGTD
GVASAVQSLKAGESHNEVFTVQVSDGLGGVDTQQVTVTVTGTNDAPVLSFAAGNDAGAVK
EDTTLSVSGQFSSADIDHDATTSWTINGSATGTYGSIAVDSTGQWTYTLANGTDGVASAV
QSLKAGESHNEVFSVQVSDGLGGVDTQLVTVTVTGSNDAPVLSFAAGNDAGAVKEDTTLS
VSGQFSSADIDHDATTSWTINGSATGTYGSIAVDSTGQWTYTLANGTDGIASAMQSLKAG
ESHNEVFSVQVSDGLGGVDTQLVTVTVTGSNDAPVLSFATGNDAGAVKEDTTLSVSGQFS
SADIDHDATTSWTINGSATGTYGSIAVDSTGQWTYTLANGTDGVASAVQSLKAGESHNEV
FTVQVSDGLGGVDTQQVTVTVTGTNDAPVLSFATGNDAGAVKEDTTLSVSGQFSSADIDH
DATTSWTINGSATGTYGSIAVDSTGQWTYTLANGTDGVASAVQSLKAGESHNEVFSVQVS
DGLGGVDTQLVTVTVTGSNDAPVLSFAAGNDAGAVKEDTTLSVSGQFSSADIDHDATTSW
TINGSATGTYGSIAVDSTGQWTYTLANGTDGVASAVQSLKAGESHNEVFTVQVSDGLGGV
DTQLVTVTVTGTNDAAVLSADIANLTETNAPLTTNGTLTISDIDSAATFVTQTNTAGSYG
QFSIGTNGAWNYVANSAHNEFVAGTTYTDTFVVSSADGTLTSVTVHILGTNDAAVLSADI
ANLTETNAPLTTNGTLTISDVDSAATFVAQPNTAGSYGQFSIGTNGAWSYVANSAHNEFV
ADTTYTDTFVVSSADGTLTSVTVHILGTNDAAVLSSASVTLTETNAPLTTGGSLTVSDID
SPETFQAQSATAGANGTFAIDAAGNWSYTANSAFDALNVSDSLTDTFTVLSADGTATAVT
VTINGSNDSPTITSNGGDTTASVSVAENTTAVTTVVATDVDLPAQTLSYSIVGGADAAKF
SIVSGTGALSFISAPNFEAPTDSGTNNVYDVIVRASDGTLFDDQAIAVTVTGVNDNSPVI
TSNGGGATASVNVAENTTAVTTVTATDADLPAQTLSYSILNTAGTDFSKFSISSSGVLTF
NSAPDYENAQDVGGADGDNAYVVDVLVADGNGGTDTQTITVNVQNVVETPVDTVAPTVTV
TGTALGNVITPSPSTSTVTFQFSEAVIGFSLSDVTVSASGPTPRGTWSNFTQVDGDTYTA
TLTRTLIGSVKVDVTANSYTDLAGNAGAAGSSANLPAGVAGEPINLALTTPSSDISGPIT
VSISGVPSGWIFNAGTDNGDGTWTVQTSDPGALTVTTPSDFAGALVLDVNMCWSNSDGSD
GSAYVFNNIEVYAPDAPIFALSADDNLSGSSGADTFVFAQPIGNNQIYSFDVTADKIDLI
GFAGVTGFADLSITNDANGNALVSIGSGQSVTLKGVDAADLSEANFQFDVDPVMTNTGTL
TIADGAIMPFGGSIHNSGTIELGSTGSETNLEILFRGATLTGGGQVLLSDSAQNVIFGGS
ADTVLTNVDNRISGAGQLGAGQLVLVNAGLILASGLNSLVLDTGTHTITNSGVLESTGAG
GMTVASAVENSGHLWANGGDMRLLADVMGNGSATIDGDATLTFSGAAHGSVAFHGDGAGT
LVIAQAEAAGSLVGILGLESDDMLTFGDLAFGANTQLSYSTNASGSGGLLTVDDGMHRAE
VNLLGHYTVEDFQVTDGEAGTQVSYNGASSGTLVGSMAADVLSGGDGNDILAGRGGEDTL
SGGAGADMFAYLNAAEGGDTILDYNFAEGDALDLSALLSANFVSGISQASDFVQLAQSGS
DITVKVDADGAANGTNFADVAVLANTGTSGTDLVRTWFGEADHTLTA