Protein Info for Pf1N1B4_3438 in Pseudomonas fluorescens FW300-N1B4

Annotation: FIG00963434: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1677 transmembrane" amino acids 440 to 466 (27 residues), see Phobius details PF20178: DUF6543" amino acids 83 to 347 (265 residues), 160.4 bits, see alignment E=9.5e-51

Best Hits

Predicted SEED Role

"FIG00963434: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166QIZ8 at UniProt or InterPro

Protein Sequence (1677 amino acids)

>Pf1N1B4_3438 FIG00963434: hypothetical protein (Pseudomonas fluorescens FW300-N1B4)
MNMNTEHPDAWMPSFRPDAHYQHLMSVIPSWLMQANAQKREALLKVKSQLPAELKAASRA
QHVELGKLNARHWEAQNRVDRALARLQNASTFAEPILAAEIKKRFGLELDVSHTFLRLYI
PARIPWLRLKSGAARIWTVSLLDAALHNFESSETTDQAFESASTYITPPSSTGQFKQLPH
ILQKMPIAAFTRLCRELDIGERYKEHLEENLGLRNPVATAVMQSKVRNSQKAALTAALQM
AYMQNKLGGAVHQLILGLLDGLQHLRLRGQEWGCHELTIMNANLTGIVLFAPDLERSHET
VRVVAYIPDDPEHPIKEYSSTGAFAQELIQRLRNHDYQQFFSRFIDHEDRGHFFAQLNNR
LTPITWQPLQPGDSRPTWRDNPDQRVNLQMAAVPIQGDLWTHLYQRKLDKILNDARVIAV
STALVDQKARWALWDSFTDVASALLNIAAFVALPFVPFLGELMLGYMAYQLLDETFEGIV
DWAEGLTDQALEHFMETVQSAVQLGTLAVGGALVVGEFRSVLPREVVEFIDRFKPVKTPN
GETRYWKPDLAPFEQRAELPKGSPTDERGLHNHQGKSLLRLEDKLYAVIEDPQTGQHRID
HPTRPDAYKPALKHNGEGAWQTELEQPLEWDQAKLLRRIGPDMERFSVIERERMLKISGD
DENTLRKMHTDVERLSPMLADTLKRFRIEQDIQTFIEQMNSDRPEDFLKADPVTQLELLH
ENGYWPERKGLRLIDEKAQTLWQSPGSAVPDLQIDVTQMNDGDLLKTFLLTLDEAEIKTL
MGEEFGAPVARLDTRTRTLRRTLAEIVERKRAILFDYRYRKLERGARALAHTIINAEPGL
PTSLAEAVLDTASDQELQQLKQGTLPGRLVELSREAALQTRVTRAYEGLELKSTADNLDT
QRLALHSLERLPGWSGQLRIELRQYRYEGQLIDSVGNVDASLRKVLVMTEEGSFQAYDET
GQALNSASDLYASLLQAFPDPERTALKIHIGEGEKLKQSIREHALSRDELRTRLSHHPIF
KPTYDPSVMRLLGGSDGYRRMPSQSPTLQDRAHSLFPHLWAEELQAYVERLQLHPSGPRA
ELTRLIGEHERLVDELQLWTGDIPLYIPDTDVRIVANQFTTQQRNRRQFMNQLLDCWRRQ
ASHPLTDTWHVDFIFSRPILGELPVLSADFTHVSNLSLTGHRATRGVNGFLKRFFGLHRL
ALRNFNLGNLPDAITQWPHLNELIISDCALTLTPQSQATLAALGELTTLDLYQNPLGLLP
NVENMPYLDYIDVAGTGVSSIPTGLLTRPHLRTALLNDNRIPELPAALFELPPDIQNGFD
LGGNPICAADRERIKRYFVKTGRDFGVFAEQADIQRLQRLYPRLDQERASDFIYRLPGTL
QEGQTELTRLEGEFETLRTTLEIWTQDIPTHHPVSGQALTDVERVFEELNRIETKRILER
CWRHETNVDGFNATLTPTYDLTLTINITGNLPVLSADFSHVTLLYLHSSAGMTSGAGRFL
ECFPRLKSLTIREYTLNEIPDAVFRMGDLTALALTRCQLTLTTQTLLELAQMERLDYLEL
SNNPLGLTPDVSQMPELTVLLLNSTGITEFPPGLLQLEFLEVVDLSANAIIEIPSDILEL
PMEIGESLNLRGNPLSEDSLRRLFDYFRLNNVDFGHDEIIDNAQLEMSSSGNSEVEE