Protein Info for Pf1N1B4_3416 in Pseudomonas fluorescens FW300-N1B4

Annotation: Outer membrane protein romA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 PF13483: Lactamase_B_3" amino acids 78 to 287 (210 residues), 41.7 bits, see alignment E=1.3e-14 PF12706: Lactamase_B_2" amino acids 96 to 287 (192 residues), 150.3 bits, see alignment E=5.8e-48

Best Hits

Swiss-Prot: 42% identical to Y906_MYCTO: Uncharacterized protein MT0929 (MT0929) from Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)

KEGG orthology group: None (inferred from 82% identity to pfo:Pfl01_4305)

Predicted SEED Role

"Outer membrane protein romA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166PAJ6 at UniProt or InterPro

Protein Sequence (352 amino acids)

>Pf1N1B4_3416 Outer membrane protein romA (Pseudomonas fluorescens FW300-N1B4)
MATLTSPADNASTLEASRQAQGQYRNHVPVKREGFRKTLRILWNIIFHKPRDTRPSAPVP
VQTLTQAALIAAPNHSVYRLGHSTVLLKLRDKFWITDPVFAERASPVQWAGPKRFHQPPI
SLEDLPPIEAVILSHDHYDHLDYQAVLKLADKTQYFLTPLGVGDTLIKWGIDASKVRQLD
WWQSTEVDGLQFVATPSQHFSGRGLFDGNSTLWASWVMIDGDTRIFFSGDSGYFDGFKRI
GEQYGPFDLTLMETGAYNVEWPHVHMQPEQTLQAHIDLKGRWLLPIHNGTFDLSMHAWYE
PFDRILALAWERNVSITTPQMGEAFNVMYPQRGSAWWFGLEGESNQAAPQNA