Protein Info for Pf1N1B4_335 in Pseudomonas fluorescens FW300-N1B4

Annotation: Glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1583 PF05045: RgpF" amino acids 538 to 761 (224 residues), 54.1 bits, see alignment E=1.2e-18 PF14307: Glyco_tran_WbsX" amino acids 799 to 1140 (342 residues), 407.2 bits, see alignment E=7.7e-126

Best Hits

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MK80 at UniProt or InterPro

Protein Sequence (1583 amino acids)

>Pf1N1B4_335 Glycosyltransferase (Pseudomonas fluorescens FW300-N1B4)
LSAEVGNNEKGFFEDAAVTDFNVELLKALGHDWHTLTPILPEELESKVAEDHKVLAIELL
RSKLAGINCFGVKDPRMARLLPFWQAVFAALELKVSYVVAFRNPKSVAHSLANRNNFELE
KGYFLWLEHMLFSMKYSQGTSRVFVNYDLMLQEPEKQLKRISASLGFPFDPQGPEFLEYQ
HKFLERSLQHNTFTPEDLSKDPAVSVDVLKLSNVLLELSHDKRADDQALEALLNDLHRGM
LERLPAYRLMRHFEDHSSELSLRLIEQAALKDQSIKALEVDFDNLEAQHSTLASEYSNLV
AHRSALESEYGTVNTVLADSERTIQSLEADLRRYASGRFLLKSLVSHMAERFGLRYRGDN
PAESELFDANYYLTTYEDVRAAGVNPLQHYLEQGWREGRDPSAGFSTNAYLERYADVRLR
RINPLIHYLRHGYYEGRSIYDTKGRNYHLSRKLSRHRTVVQLLSLVSQQPQLLGRFVREA
RRGGLRHAIAIAARTLTRSQKRLALSKVLQPLSDSALTEYEVLKVVPYYLDPYLQEITKP
GSTMIAVHLHLYDEQMTGDWSDYLKHIPVEFDLFISHSDAGNTKFDDKSLRATVPLLRKL
VVEGVPVNSGHLAPLIIQFGSRLSSYDYVAHFHDMGGKDADTNLRMEQLCGSPSIVGQIF
DLLGNDAKVVYPVDHRPEDATYHESGWSDARGVLPTVMEKYPQVDGATFPSAEFPRAGMF
WARVSIVSDFIHLPLQYEDFAATSDMLTHCLERLLLVCTTTNEGRNYQLESPQLSRDPLA
YYEPQSDYSGSIVHDTIKVLAYYLPQFHPTPENDEWHGEGFTEWYKVRSANPLFHGHYQQ
HVPHQDIGYYHLDGPAQLMQQAEMMKKSGVHGLIFYHYWFTGRMILEKPAQMLLDNPQID
MPFCFCWANENWTRRWDGNEQEVLLGQVYSENDARDFIRYLIPFFKDERYIKVDGRPKLS
VYRPSSIEHSERYIAIWREECEKAGVKPPYVVATLTRGASHPQDYGMDAAIERVLHDWTG
DAVADTRAQLRPYWPLEGSVLNYSEVADHYMEQDLGKDFTLFRSLVPTWDNTARYGTRAY
VLNNFTTAKFQSWVERLIDYSEQNLPEDRRFVVINAWNEWAEGAHLEPDTRFGYGYLNSI
GRAMSGQSFSAAGHDALDSDLKLNIVLTSDASARLEAEPQSRHKFLACLASSGVFERCSV
VVESAQVHQALQAQGVKVSSHAVDSADFTLVFSDVCLFPADTIESLLKMAIRHKGFAVSA
NLRNDPDFVQSENIVNFTIEADQRACMELRPNVSAIGYKICCEASCFQLMPEAVTQVALD
TVSTIMRYHRRGDRASLINALLSLIAQSGCLVKPILAIQDMSDEEIAVLEGELAKLPWSD
GCAPVIRRYSSTEQAPDLRSLMLNDTLKAVGHGYAAFLDYDDLLFPKAYEVLLEQIKSSG
KNATFARVYSTMVDAVTGCTIKREKIYDYGETYRDFVEHNHAPLHSFLLNLDKCDLEAVT
YFDDMKYMEDYYLTMQLFTRAGTDWASLRTCGFIGDYIHRIGCDTHTLALTDEQQRTDLL
NSESYRVCEARIKALRDRLLAHA